Scaffold Ga0272435_1001083

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001083
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33158
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F019584	Metagenome	228	Y
F029296	Metagenome	188	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100108310	F057010	N/A	MTMKALKKRCEELKARLQARKITSSSSIYSEHSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVNLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIIDLKNKINSQLXFVXITQLIQFSTLKEIRFYFIQLNNDQRAIXEIKNREAMIKAQTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKFDHTSKECLNKSFRINALNDKFDHSLNFDSESDSKN
Ga0272435_100108314	F029296	N/A	MSELLIFDHQQLKKIKQIIEAQMNKHKRDVIYEVDDQVXLVFENIKITKSCKDLKDKQLDFYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSNDLLSEQHSEFSKSMIIEENEKHXEVDNILNFRRYRERLQYKVKXIEINRDNEXYYVDKEKFNDSKKVLNEFHKLYLNKLH
Ga0272435_100108318	F008735	N/A	VNLLIYDESXLNINDLDSMKEIMIIVHVYALYQTLLSCIQLIFVSLILKYVKKLLESRSNDDSDRIHRKMNDEKRLIVQDLCNDLSYHHQRLRIQLYINXRTENDEXEXNDNIMLLNLILKLLHCAKDLNXIFNHTLSELFDSTLIVDQEIVR
Ga0272435_100108319	F001951	N/A	MTKLKFIDSLKDERERNEDIIKTIVTKVMIFELKELLINAEMLLTLMNKMMSKMKRD
Ga0272435_100108330	F019584	N/A	LIQLSTLKEIRFYLIQLNNDQRAIREIKNREAMIKAQTTKQIIFVEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKFDHTSKECLNKSFRINALNDKFDHSLNFDSESDSKN
Ga0272435_10010835	F001253	N/A	LSQXDHHVERREEIIYREIERXGKKLVTFIKDVMKNVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQIVYDHLQIESLSLIKLKSIREFDDHYAKRLITHAIYLNLTVQDHMKRFISMLITQLD