Scaffold Ga0272435_1001015

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001015
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35184
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F028368	Metagenome	191	Y
F032884	Metagenome	178	Y
F051591	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100101512	F028368	N/A	LCKLNEILSKENYFEKLFLIDAHFIFQKXYFSLRFLIDSDSVIYMIIHFNLVNKVSKKLRIQSISLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLTVLMLIADIDHHEVILSKLXMNKNEILLNIQNDDIVFLNQLNTSISIFLILLNLKHSNXLQSLLLSFITQTKTFMMLKQLVSIIAQKESFLIQSINIASFKTLLNHSKKNKIEVFALFMMNINKKITYNTQCNLNALNVSSINEMTQNLKDIKAKLSSKYYEFLNVFNRAQSNKLLSHCFYDYKIELISDSMLFHCXVY
Ga0272435_100101518	F002432	N/A	MQNDXAKXIFMIEFSDNVNMFLIISIISFYFNKEFHSRISFDSDITDYEITHEXIEARKADDIVIQMKELLNFDHQQLKKTKLIIEAQVNKHRXDVIYKISDQIXLSFRNIKITRSCKNLKDKQLDLYSIIVKVKTFYHLRLFTSMKHIHSMFSSKLLQSCSEDFLSEQYSESFRSITIKDDEHXKINDILNFKCYQDQIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNKFHKLYSSKPR
Ga0272435_10010152	F006206	GAG	LCKLDEILSKENYFEKSFLIDAHLISQKQSFSLRSLIDSDSVVYMIIHFNLVNKVCEKLKIQFISLTKKKLIRDYDEKIFKKIITHKILLNLIIKSHKKLTVSMLIADINHHEIILSKFXINKNEILLNM
Ga0272435_100101524	F051591	N/A	MLDAIALYLRYXSSCIISLRIVTTDLDLLSCTLRKDKTDSDLIRNAVLLXNNIVLCAIFKCKRVXFRFLHQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXARKISIFDFXLAMQSSVKLLSRMRACFDHTIVLYNLLIDLIYHMLR
Ga0272435_100101527	F032884	GAG	MTIRNERVEREECKETKKNESTMMRIERARLYVQTIDVIDQXKDIKQRLXSDYM