Scaffold Ga0272435_1000910

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000910
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38531
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100091010	F004755	GAG	LSYVHSRLFDDAAKITQARRERDCVNFYRIIKDLLKELAQLFNDSNKKVNFRKEYYNLVQESKKFSKFYTQFQQLSFYLDYHEKQLIIDLKDKINSRLRFIXVDQLVQSDSLKEIHFYLIHLNNDQXVIREIKNKLKRVNDVSKTIFHKVIIIIQSVDHLKFDNLKSRSAILTNVKEADILVKSCFICHKSDHSFKKCFNQSTRINAVNKEYNHFDFDLNFDSKN
Ga0272435_100091016	F087978	N/A	MFSLKLLXSYSEDFLSEQHSESLRLITIEDDEHXEINNILNFRRYQDXIQYKVKXKDLDRNNKXYYVDKEEFNDSEKVLNEFHKLYSSKSR
Ga0272435_100091022	F011463	N/A	MKKLLNFDHQQLKKTKLTIKVQINKHKXNVTYKVNDXVXLSFRNVKITRLCKDLKDKQLNFYQITAKVSIFYHFHLSVSLKHLHLMFSLKLLQSYSENSLSEQHSKSLRSITIKDDEYXKINDILNFRRYXDXI
Ga0272435_100091026	F028367	N/A	LCKLDKILSKENYFEKLFLIDTHLIFQNXSFSLRSLIDSDSVIYMIIHFNLVDKVCKKLRIQFISLTKEKLIKDYDEKIFKKTITHKILLNLIIKSHKKLTVLMLITDIDHHEVILSKLXINKNEILLNMQNNVIVFLNQLNTSISIFSISLNSKHSNXLQSTSLSSITQTKIFTMLKXLISITAQKESFLI
Ga0272435_100091029	F002432	N/A	MQNDXVKXVFMIEFNDNFNIFSITSMTFFYFNKEFHSXMSFDSDTTDYEMTHEQLKARKANDIVIXMKELLSFNYQQLKKMKLIIEVQINKHKXNVTYEVNDXVXLSFKNVKTTRLCKDLKDKQLDLYQITAKVNIFYHFHLLISMKHLHSMFSLKLLQLYSENLLSE