Scaffold Ga0272435_1000849

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000849
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40631
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F028367	Metagenome	191	Y
F039410	Metagenome	163	Y
F057010	Metagenome	136	N
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100084910	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNQLRESINS
Ga0272435_100084911	F057010	N/A	MTLSSIVEHCSSLNFFLLKHSFNSISSFFLIILRLFKECFEASFFIVEDNNSFAEIITSSMTMKALKKRCEELKARLQAREIISSSLIYFECSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIVDLKNKINLRLRFAXVTQLIQLSTLKEIHFYLIXLNNNQRAIXEIKNREAMIKARTTKQIIFTEESVKATXRIIEMKMTDQSKSHDAVLTNVKENDLLIENCFLCRKSDHTSKECLNRSFRINTLNDEFDHSLNFNSESDFKN
Ga0272435_100084913	F008115	N/A	MLXNVYQLHDLLSSIVSNRDSQFISIMXQSLCKXLKIKVNLSIIYHSEIDDQSKRANQDVERKLRIYCNYMQNDXVKXLSMMKFSDNFNTFSTILMISFYFNKDFHSXMSFDSDMTDYETTRQRIEARKIDDIVIXMSELLIFDHQQLKKIKQITEAQMNKHKRDVIYEVDDQVXLVFENIKITRSCKDLKDKQLDLYLITVKVEIFYRLQLFRSMKHIHSVFSSKCLQSSSNDSLLRQHSELSRSLIIEENKEHXKVDNILNFRQYKERLQYKIKXIKIDHDDEXYYVDKEKFDDSKKVLNEFHKLYLNKLH
Ga0272435_100084917	F028367	N/A	LCKLDEILLKENSIEKSFLIDAHFISQKQSFSLHSLIDSDSVIYIIIHFNLVNKVCEKLKIQSISLTKEKLIRDYDEKIFKKTITYKILFNLIIESHKKLTVSMLIVDINHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISILSISLNFKHLSXLRSTSLFSITQTKTFMMLKRLVSITAQKESFSIQSINIMSXF
Ga0272435_100084918	F004755	N/A	MILTLSFYLNYYKKQLIINLKDKIHLHLRFIXVDQLVQSDSLKEIYFYLIHLNNDQRVIQEIKNKIKCINDVLKTIFHRATVIIQQSFNHSKSDHLKSHDAILTNVKEADILVESCFVCHKSDHNFKKCLNXSTKINAVNKEYDRFNFDSNFDSKN
Ga0272435_100084919	F002432	N/A	MXKSLCKRLRITASLFTAYHSEINNQSKRVNQNVERELRIYCNYMQNDXVKXISMMKFSDNFNIFSITSMILFYFNKEFHSRMSFDSDTTDYETTCERLEARKANDIVIQMKELLSFNHQQLKKTKLIIEVQINKHRRNVTYEVDNXIXLSFKNIKTTRLCKDLKDKQLDLYQITAKINIFYHLHLSVSMKHLHSIFSSKLLRLYSEDFLSKQHSESLRSITIEDDEHXKIDDILNFRRYQGRIQYKVKXKDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSSKSR
Ga0272435_100084923	F039410	AGCAG	MSSKFXVVSLIEETFRTFKSHXVLYAISLLMFIMNRAKTSILFFFEQFNSVLNKATSMLXIENDSFXAMIEMNCLSIVEVLVXVIEKSEVDRDQLECFELSEIEKIEIEVFNXFKKTMTSFCIFSNISFLFIQNLLNMTSXXLISAINIDTFNFLXLSMMRLSRILXVIVFLDIFSS
Ga0272435_100084927	F074203	N/A	MFNHSFTEECSEEFRNHFSQIFDADSLKSSSAASFLHEDDESFAEMIISFMFYEIXKTXSLVLDKETDXLYKLDKQQEDKIKKLKIKLQAKENTSFNSIYSEHSRSQKIPDSLLFIDEKNSTXKNXYEKIQNKLEINVDLFSNEXVKLSYVHSRLFNDAAKITQTKRERDCINLYKIVEDLLKELAQLFDDSNKKVNFCRKYYNLI