Scaffold Ga0272435_1000731

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000731
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44704
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.20%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F038009	Metagenome	166	Y
F046102	Metagenome	151	Y
F068292	Metagenome	124	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100073113	F068292	N/A	VKQLKVTFDKNNELEKKINQLQDEQLNFRAKQHQADXFMSRQDTQSAEQXVNQKVEXSLTFKAHSQXESFTLSENENNYYKFIKLSNSLIFIETDDFIXKTXNIKIVDKLNVNVNHYFTEKICIVYVIFRLEDDADQQIYAKHYVDAFSFYQSLSKLLKHLKEIYEDQNLIQKYRCEYIVLKQLNKSFSSFYSEFTRIFSFLNYNDIILMNKIQNKINNHLQNVLSVCLIKFSSLNKLKIFL
Ga0272435_100073114	F046102	N/A	MKDVLISSTMSSSNNLFASKSLTTECVLSSNEISYSLKSLIDIEAADYFFIDELIAQNVYDHLQIESLSLIKLKSIRRFNDHYVKKLITHAIYLNFTVQDHMKRFVFMLITXLDQHQMILEKTXMNKIKMTIDMRDDHLRISSFKANIKAFIKAHLTVLSSKKIAIEQKSSIST
Ga0272435_100073129	F038009	GAG	MIKASSFQLNYVKLYKRSIKLIYLRNNRSFKEKRISTLDFXXVFFLNDLKNTTKSFLFQIKDKTEXDLFLVNKLSISXLFMSEREVILLLVSRXETELLLASKLRTELLLVSELKTELLLSSEXETRLLLASELKTELLLSSEXKIKLLFASKLNAELLLVNDL
Ga0272435_100073130	F001951	N/A	MIITKLKFINSSRNEKERNKDTVETTVTEMMILKLKELLINAKILLTLTNEMMTKMK
Ga0272435_100073131	F089602	N/A	MKDEXLNFIEILSEKDNDLSEIIDIMLQTVNQXEIFHQRTFFLLIEEIVVINKVIHVLLQSFTKI
Ga0272435_10007314	F046102	N/A	MMKDVLISSTTSSSNDLFVLKSLTTECVLSSNEISYSLKSLINTEAADYSFINELIEQNICDHLQIESLSLIKFKSIREFDDHYAKKLITHAIYLNLTVQDYMKRFIFMLITQLNQHQMILEKTXMNKIEITIDMRNDRLQFSDSKTHIDASSTSLSIIKKIAIEQKSSIFTQILKRFIFSVVT