Scaffold Ga0272435_1000701

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000701
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46500
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070710	Metagenome	122	Y
F094622	Metagenome	105	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100070132	F094622	N/A	MFTSKQRVYSNDSDSRNNVTMIAMKMNXKLNKRLKRLTLIITHHDELKELVTKMKHLADVATVNQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIAHERI
Ga0272435_100070135	F100079	N/A	MFKYRHFICKQYADEKTSLKEERHKRVNKEXSNYAIXLKV
Ga0272435_10007016	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKSFLINREVHDFDIIVIQKQSCNINDTQLFNSAHNFFYLVKNTSSQSRTYIYVNKYLRLNQXMIETAESDICSIRILTHNTDDEMQTLQLINVYNSCSLFSTFTEKSSIISCLSELFKDDCEQLIMRNFNLHHSHXEEXRCFT