Scaffold Ga0272435_1000689

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000689
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46890
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F036036	Metagenome	170	Y
F044226	Metagenome	154	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100068913	F044226	GAG	MMKFNNNFNIFSITSMIFFYFNKEFHFQMSFNSNMIDYKTIYKRLEAKKANNIVI
Ga0272435_100068914	F094626	N/A	MFLNERNIVTARSFKKLENKMLDSFINLDLINFSYKLKLSEFMHVHDVFHSDLLCSVVDDFLSDQKNEFSDSIVINDEDE
Ga0272435_100068915	F036036	N/A	MLINLIHHLFLYFDQSFMSEDQCLVHLFKYILDSIDLQAFANVFILNDVRIKAHMRIVRDRFKASHRNVI
Ga0272435_100068918	F013598	N/A	MNFIINLFDLYDYNAILTVICRLSKERHYISCIIDDEDITAEKTAEMLIQ
Ga0272435_100068919	F017941	N/A	MKIADLEKNNDQSIYKQILEINEIDENCTLLREAIARDEAQCKDIKLKNY
Ga0272435_100068922	F000597	N/A	MSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKT
Ga0272435_100068923	F017941	N/A	MKIVDLKKNIDESIYKQILKTNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272435_100068927	F018839	N/A	MIAKVITFDHLTSDLYAAVFIIAMFIELKDEDLTELNDFTILLNEDDFSLSQVTTEEINLFNI
Ga0272435_100068929	F001253	N/A	MKDVLISLTTSSLNDFFALKSLTIEYVLFSNKISYSLKSLIDIEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKHFISMLITQLSQHQMILEKT
Ga0272435_10006897	F006206	GAG	LCKLDEILLKENYFEKSFLIDVHFISQKQSFNLCSLINNDSVVYMIIHFNLVNKVYEKLRIQSISLTKEKLIKDYDEKIFKKIITHKILFNLIIESHKKLTISMLITDIDHHKVI