Scaffold Ga0272435_1000488

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000488
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61245
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (50.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021452	Metagenome	218	Y
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100048858	F065269	N/A	MTKSSESASIARYELQNARRESLLSQNRTVSEEEDTNASLNTEEENMNALLFDHEMIKISINTELNA
Ga0272435_100048860	F021452	N/A	VTESDILIFCFISMSDDSFDFKSFTVDIILNSLEKIFRFLVLINTEVTDMIFINESLISKLCECFDIQSILLSKSKSIQLYDEISDRKLITHALYTSIMIQEHKNEMMLLLITRLDQHKIIIENL
Ga0272435_100048866	F061402	N/A	MTEFVDNNAISLSIEQSTFFLNKSFHSHMSFDLNSIEYEITQARIEADKAKNIFKHMK
Ga0272435_100048868	F104131	N/A	MSHFFKERFEASFFIVEDNNSFVEIITSSMTMKALKKRCKKLKAKLQAREIILSSSIYSEHSRSQKILDSSLFTDEKNSI