Scaffold Ga0272435_1000437

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000437
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67232
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (49.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F019584	Metagenome	228	Y
F032102	Metagenome	180	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100043710	F001253	GAGG	VTFTKGAVEDVLISSTTSSPNDLFAPEPLTTECVLSSNEISYSLKSLVDTEAADYSFIDELTAQNVCDHLQIESLPLTKPKPIREFDDHYAKKLITHAIYPNLTVQDHMKRSVPMLITRLSQHQMILGKT
Ga0272435_100043714	F032102	N/A	MKIADLKKNVSESIYKQVLDVNEIDENCTLLREAIERGEAQCEDIKLKNCRVQNEILYKDSQL
Ga0272435_100043717	F059497	GAG	MLIEDIDRKIVYNTQCKLNVLNVAFIDASAQNLEDIKVKLSLKYQNFLDVFDQAQVDKLSSHRSYDHKIELTNNVTSSRC
Ga0272435_100043719	F044226	GAG	MIKFSDNFNTFSTILMTSFYFNKNFHSRMSFDSDTTDYKTTRQYIEARKINDIVT
Ga0272435_10004376	F019584	N/A	MIKAKTIKQIIFAEESVKAIRRIIEMKMTDQSKSHDAVLTSIKENDLLIENCFLCHKSDHTSKECSNKSFRINTLNDEFDHFLNFNSESDSKN