NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000431

Scaffold Ga0272435_1000431


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000431 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67947
Total Scaffold Genes87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (44.83%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F006206Metagenome378Y
F013598Metagenome269Y
F017941Metagenome237Y
F036036Metagenome170Y
F037509Metagenome167Y
F044226Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100043110F044226GAGMMKFSENFNIFLIISMISFYFNKEFHSQMSFDSDITDYKITCKCLEARKVDDIVI
Ga0272435_100043113F006206N/ALKENYFEKSFLIHDSLISQNNSFNLCSLINSDFVIYMLIHDKLVNKVCQKLEIQSILLAKEKLIRDYDEKLARKTITHKILLNLMIESHKKLTVSMLIVDIKHHEVILSKL
Ga0272435_100043117F037509N/AMILIFIFIQIHLIDNEMNIKKFMYLIINNIERQNNIKKLIESTKTYNHVIAREFIAQSVASIQIN
Ga0272435_100043129F017941N/AMKIADLKKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272435_100043130F013598N/AMNFIINLFDSSEYNAILMIICRLSKKRHYISCITDDEDITVKKTAEMLIQ
Ga0272435_100043131F036036N/AMLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDSIDLQTFANAFILDNVRIKAHTRMKVLVHEEKSQEDD
Ga0272435_10004315F000597AGGVTFIKDAMKKMLISSTTSMSDDSFASESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIESLTLIKAKSIQEFNDHYAKKLIIHVIYLNLTVQDHTIDTAFMLIT
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