Scaffold Ga0272435_1000411

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000411
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69791
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (23.08%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F023763	Metagenome	208	Y
F025887	Metagenome	199	Y
F065269	Metagenome	127	Y
F069514	Metagenome	123	Y
F076668	Metagenome	117	Y
F079402	Metagenome	115	Y
F080690	Metagenome	114	Y
F083460	Metagenome	112	Y
F086377	Metagenome	110	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100041135	F065269	N/A	MIRSTELESVSIACYELQNAEKESLLSQNXTALEKKDMNASLNTKEKNMNILLFNHEMIKISISIKLNA
Ga0272435_100041141	F080690	N/A	MKSSYNFLIDDERAVEQFTQSMIENSVEIFRAMQELQNQVRQHDVIISFSFIILSSSIYIKLNSQFLAMIAQIVTQILNNQSIFIIHLFANFVAVIIASRFKKLLDIFEYKRDKDXLNAXKQSLIQRMNVNDDHYFSHXAKIIYVESRLIIDKKTHNLMNQYXVNDFCIIFIFADXXYKLHHCCNNSFKTEDAHLYLCETLKQSMNNFADYYNLFYQKKEHSLMKDFLLTDCLKCNVNYFIQVIALFXQNLDETQLFIFH
Ga0272435_100041144	F086377	N/A	MIQRFXNQRQRISILNCDSIQILIVHAEAKFFFEFFDEKNKDNHLKAIDLNEIFA
Ga0272435_100041145	F023763	N/A	MTCQSIQFIIDLVKMICNAIVKSRQKFTSMSLMITQLFNXHEVLKIFMICDHFDRTDKVFKLXTSFFKCINNDHEFFIVDFVVTLDXVMLLEKVSNXMKNFILIILRKNVFEYIVXSINFYHNLIIXIIVTKNNLESEDFLKNVECNLTFLNSDKEYIFSDEMNERSSYSTIVIDESSIKVCKI
Ga0272435_100041149	F079402	N/A	MKIAYVKSXVSETMIKHIALKMRNIITNSFLEAEKILSIINKMYNDFN
Ga0272435_100041154	F076668	N/A	MTCLLLTSSFLAYASAHKMSKNSMHSTNHYAIKETSVFKSTTTTKKIMHMNNVLFTDILMLCNRKNATNQTLLRCAKFENIRRSQKISFSKXSLKDXLERLCMIMLKXTCYNMIFTFNALSXMLFKKSLKTLXFSLXKVSALLFCIIILVVEFSLTFCSMQTLTXXQFMSNASSFKIKIXDLXRISXXILMSCFSRQTRKCLSSSVK
Ga0272435_100041157	F025887	N/A	MFDDSFNFKSFIIDVILNSLEKLFRFLILINIKVIDMTFINKSLMSKLYECFDIQLISLSKSKLI
Ga0272435_100041159	F098340	N/A	MIEVAVYQTLVKNKKIKIFFLIISEINKVLSSVKDFAKLNKIISVMSLNKLKKKLLIVYHDFLNVFDKEKITQLSLH
Ga0272435_100041164	F083460	N/A	LRIKSSDNQAYSDALLELNASSIEYAMRHRLHELLNYRLNHEESQGNSENEDENEAAEAV
Ga0272435_100041171	F069514	N/A	MQNDXAKLLFMIEFINNNALFLIIFLISFFLNKDFHSCMSFELDIIEYESSCERLQTIKVKNISEYMNKTLKFARKSLVKT
Ga0272435_100041174	F007840	N/A	MIDVIKRQNNTRKSIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQK