Scaffold Ga0272435_1000404

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000404
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70972
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (63.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F059497	Metagenome	133	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100040494	F007840	N/A	MIDAIERQNNTREFIKSTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNRSRELINSQIKQQK
Ga0272435_100040495	F104131	N/A	MSRLFKESFEASFFIVENNDSFAEIITSSMTMKALKKRCEELKARLQAKEIISSSLIYFKRSRFQKILDSSLFTDEKNSI
Ga0272435_100040497	F059497	GAG	MSIEDIDRKIVYNIQCKLNVLDVAFIDASAQNLEDIKVKLSSKHQNFLDVFDRAQVDKLSSHRSYDHKIKLTNDVTSSRCQAY