Scaffold Ga0272435_1000397

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000397
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71572
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (52.87%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F028978	Metagenome	189	Y
F059497	Metagenome	133	Y
F069514	Metagenome	123	Y
F084912	Metagenome	111	N
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100039776	F059497	GAGG	MSIEDIDRKIVYNTQCELNVLDVAFINASAQNLEDIKVKLSSKYQNFLDVFDRAQVDKLSSHRSYDHKIELTNDVTSSRC
Ga0272435_100039777	F084912	N/A	MTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDKFDHSLNFNSESDSKN
Ga0272435_100039780	F007840	N/A	MIDAIERQNNTRKFIESTAKLIELLNDLQLIKYASFISINRISNKESSLIARESNRSRESINLQIKQQK
Ga0272435_100039782	F007840	N/A	MIDAIKRQNNTRESIESTVRLIELLDDLQLIKYASFISINRISDKESSLIAKESNRSRESINLQIKQQK
Ga0272435_100039783	F104131	N/A	MSHFFKEHFEASFFIVEDNNSFAEIITSSMTMKALKKRCEELKARLQARKIISSSSIYSEHSRFQKIFNSLLFTDEKNSI
Ga0272435_100039786	F028978	N/A	MKIADLEEKENDESIYRLILEANRINENCILLREVILKDEAQYEDTKLRDCRVQNEILYRDNLL
Ga0272435_100039787	F069514	GAG	MIKFVDNNALFSIIFSISFFLNKDFHSCMSFELDVSEYESFRERLQTTKAENISEHMNKTLKFARESLVKTRKQMMKQVNKHRKEVNYKIES