Scaffold Ga0272435_1000378

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000378
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74761
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (21.62%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F036504	Metagenome	169	Y
F046102	Metagenome	151	Y
F057010	Metagenome	136	N
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100037836	F013598	N/A	MNFIIDLFDSSEYNAILTIICKLSKERHYIFCITENEDITVKKTAEMLIQ
Ga0272435_100037841	F084912	N/A	MKMIDQSKSHDVVLINIKENDLLIENCFLCHKSDHTFKKCLNKSFKINTLNNEFDHSLNFNSEFDSKN
Ga0272435_100037846	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIKLKDEAKLTELNDFTILNEDDFSLSXVMTEEINFFSI
Ga0272435_100037847	F046102	GAG	VTFIKDVMKDVLISSTTSSSDDLFVLKSLTTECVLFNDEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFIFMLITXLSQHQMILEKTXMNKIEITIDMRNDHLQFSDSKTHINASSISLSVIKKIMIEQKSSTST
Ga0272435_100037848	F036504	N/A	MTRQETQSVEHQVNQKEISSTSEVDQRFRSSQESFTLFDNENDHCKSIKFSNSSIFIDTDESTXESXIIKISDKLDVNANHYSIEKLRIVYVTFRLDDDADKQIYTKRCINAFSLYLSLTKLLKHLNEIYDDQNRNRKCCREYNALKQSNKSFSFFYFEFTKIFSFLDYDDXTLMNDLQNKINNHLQNALLVCLIKFSSLDKLKTFLQRMNNKQRVNYQLRDEQXTVKSIAVSKKRFVSSLTSASVSTTSYVQLATFFILESERSRMSIICFNCKVSSHLSKNCSQLKTSTLTSRAFTSRLNEIIMSKEEKKLFTKKSKNETKN
Ga0272435_100037855	F013598	N/A	MNFIINLFDSYNYNVILTVICKLLKKRHYIFCIIDDEDITVKKTAEMLL
Ga0272435_100037860	F000597	N/A	MKEMLISLMMSMSNDSFASESLTIEYVLSSNEISYSLKSLIDIEAADYLFIDEVIAQIVYDQLQIKFLTLIKAKSIQEFDDHYAKKLITHVIYSNLTVQNHTIDTAFILIIQLN
Ga0272435_100037861	F003820	N/A	MFSTSTLXSYFKYDNCILMNDLQNKINNRLQNALSVCSENFTSLTHLKIFLQNVNNKQRVNYQLCSQLCIVIIKVTVVSDKCIATSLSAVMTLIIEYIKSILSSIFESARSFIICYTCKTSSHLFKNCFQNKINTFTFYAFTLHLHEIIISKNKKNEKMSSFKDSKTKN
Ga0272435_100037864	F007840	N/A	MIDAIERQNNTRESIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQKRLHLLLLSIVLRSISFF
Ga0272435_100037865	F057010	N/A	MSRFFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFHKDYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLXFAXITQLIQLSTLKEIRFYLIXLNNDQQAIQEIKNREAMIKTQTTKQIIFAEESVKAIRRIIEMKMTDQSKSRDAVLTSVKENDLLIKNCFLCHKSDHTSKECSNRSFRINALNDEFDHSLNFDSESDSKN