Scaffold Ga0272435_1000348

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000348
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78317
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (15.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F057012	Metagenome	136	Y
F059496	Metagenome	133	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100034817	F059496	GAG	LIFKDSYNXILRIQKKIDTKASIYVIFKDCARLERNVFVTXKEDDVDEQDVDERKEC
Ga0272435_10003482	F057012	N/A	MXLSXIDSDAXNYSEFEKXFVFIKVIIESNILIFYFISMFDDSFNFKSFTVNIILSNLEKIFKSLALINTEVINMTFINKSLMSKLCECFDIQSISLSKSKSIXLYDEIFDXKSITYALYTLIMIQEHKNEIMFLLITCLNQHKIIIENLXLKRNQILINFANDXLISLLRIQTLKSVISKASSQSAFHKFELNEICKMKXKNLNLIITSMIILKRLMNQKLVNKFIKSAFITKQST
Ga0272435_100034821	F008169	AGAAG	LKTRLQTKENTSSDFIYSERSKSQKISDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXVKLSYLHSRLFDDAAKITQVRRERDCVNLYRIIEDFLKKLAQLFNDSNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIVDLKDKINSRLRFIXVDQLVQSDFLKEIRFYLIHLNNDQRVIQEIKNKLKHVDDISKTIFHKAIVVTQSVDHSKSDHLKSHNAILTNVKEADILVESCFICHKSDHSSKKCLNRSTRINAMNKEYDXFNFNLNFDSKN
Ga0272435_100034849	F007840	N/A	MIDAIKRQNNTRKFIESTAKLIELLDDLQLIKYTSFISINRISDKESSLIARESNQSRESINSQIKQQK
Ga0272435_100034850	F057010	N/A	MTLSSIVKHCSSLDFFLLKTLVQFNLFFLIPCLFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKVNSRLXFAXVTQLIQLSTLKEIRFYLIXLNNDQRAIRKIKNREAMIKAXTTKQIIFAEESVKATRRIIEMKMTDQSKSHDAVLTNVKENDLLIENRFLCHKSDHTSEECLNRSFRINTLNDEFDCSLNFNSESDSKN
Ga0272435_100034858	F002432	N/A	MQNDXAKXISMIEFSDNVNMFSIISMISFYFNKEFHSXMSFNSDTTDYEITYERIKARKANNIVIQMKELLNFNHQQLKKTKLIIEAQINKHRRNITYEVNDXVXLSFRNVKTMRLCKDLKDKQLNLYQITVKESIFYHLHLSVSMKHLHSMFSSKLLXLYSEDSLSEQHSESLRSITIKDDEHXKIDDILNFKRYQDXIQYKVKXKDLNRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKPR
Ga0272435_100034860	F055317	N/A	MFIDEKNSTXENXSLDIREKLAINVDIFSNKLYKLSYINSRLADDVIKVTQVRCNFNCDNFYLTINELLKTLAQSFHDFDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINSRLXIFXTAQIKSLIKLSDIQNYLICLNNEHKAVREIKNKLLKRDDSKIIISITVQSSASKSDXSKSRSAVLTSIKNADVLVETCFICHKSDHSFKECLNQSIKVNAVDENYDCFELDIESEFK
Ga0272435_100034866	F096305	N/A	MSRLFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKAKLQAREITSSSSIYSERSRSQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSEEVKLSYVHFRLFDNAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFR