Scaffold Ga0272435_1000339

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000339
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80403
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (31.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F057010	Metagenome	136	N
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100033910	F008115	N/A	MLXNVYXLHDLLSSIVLNRDFQFILIMXQSLCKXLKIKVNLSTVYYSEINDQLKXVNQDVECKLXIYCNYMQNDXVKXLSMMKFSDNFNTFLTILMISFYFNKDFHLRMSFDSDTTDYKTTRQLIEAKKIDDIVTQMSELLIFNHQQLKKIKQITEAQMNKHRRDIIYEVDDQVXLVFENIKITRSCKDLKDKQLNLYSITVKVEIFYRLQLSRSMKHIHSMFSLKCLXSSLNNSLLKQHSESFKSMIIEKNEEHXEVDDILNFRQYRERLQYKIKXIKINHDDEXYYVDKEKFDDSKKVLNEFHKLYSNKLH
Ga0272435_10003395	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYTSFISINKISDKESSLIARESNRSRESINSQIKQQKXLYLLLSSITLRSISFV
Ga0272435_10003396	F057010	N/A	MTLPSIVKHHSSLDFFRLKHSFNSISSFFLIMFRFFKECFEASFFIVKDNNSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINFRLRFAXVTQLIQLSTLKEICFYLIQLNNDQRAIXKIKNREAMIKAXTTKQIIFAEESVKATRRIIEMKMTDQSKSHDAVLTNVKENDLLIENRFLCHKSDHTSEECLNRSFRINTLNDEFDCSLNFNSESDSKN
Ga0272435_10003397	F078020	N/A	MQFFFDHLISAXKDAALTLNIEKFFFEAVEVSHXSTLRAELIKEFDDRDHFECEALTDIEKTEMRASNXFKKMMTSFCIFSSISFLFIQSFSNMTSXXSISAINIETVNFLXLSTVRLSRILXIMIFFVSFLSYSLINFSLASRMSXISSFXHIXLTSFVXIKM
Ga0272435_100033978	F007840	N/A	MINAIERQNNIRRFIESTAKLIELLDDLQLIKYASFISINRISDKESSLIAKESNRSRKSINSQIKQQKXLYLLLSSIALRSISFF