Scaffold Ga0272435_1000332

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000332
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81080
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (13.16%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F009580	Metagenome	315	Y
F019260	Metagenome	230	Y
F028367	Metagenome	191	Y
F029296	Metagenome	188	Y
F051591	Metagenome	143	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N
F080690	Metagenome	114	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100033216	F051591	N/A	MLDAIALYLRYQSSHVISLRIVTTDLDLLSCTSRKDKTDSDLIRNAVLLXNNVILCAIFKCKRFQFRFLHQYAVFCTVLKLIDNLFFSCEFALXFINQITVXIDDSFFCINELSFRRRFXSAXAQKISNFDFXLATQSSVKLLSRMRACFDRTIVLYNLSIDLIYHMLR
Ga0272435_100033223	F002432	N/A	MQNDXAKXLSIMKFSENFNIFSIISMTLFYFNKNFHSRMSFNSNTINYETTHKCLEIRKADDIIIXIKELLIFNHQQLKKTKQIIKAQINKHKQNIIYEVNDXVXLFFRNIKTIKSCKNLKDKQLKSYQITVKVEIFYHFHLLISMKQLHSMFSSKLLHSCFDDLLSEQHSESSKSFTIKDDEHXKIDNILNSRRYRDQI
Ga0272435_100033232	F009580	N/A	VRIKRLKLVDKMIYIQISERDLAQRLNFSCKQRDFFIYTDDVTVVDVHDTQSEELLIXAFFNDFAXMLQLAVVAQLSLVADFLDFRNDQSLILNDDNDEA
Ga0272435_100033233	F080690	N/A	LFSFIVLSSSVYIELNSQSLATIAQIIAQILNNQSSLIVHSFANFVAVIITSRFKKLLDISEYEKNKDXLNAXKQSLIQRMNMNNDHYLSHRAKIIYVKSRLIIDKKTHNLMSQYQVNDLCIIFIFADXXHKLHYCCNNSFKAEDAHLYLREILKQDMNNFADYYNLFYQKKKHSLMKDFLLIDCLKRNVNYFTQVVALFXXNFNETXSFIFHQXVQAFSDIDEELQQLKHR
Ga0272435_100033240	F002432	GAG	MMKFSDNLNIFSITSMTLFYFNKEFHSRMSFDSDTTDYETTHERLKARKADDIVIXMKELLSFDRQQLKKTKLIIEVQVNKHRRNVTYKVDDXVXLSFRNVKTTRLCKDLKDKQLDLYQITAKVSTFYNLRLSVSMKHLHSMFSSKLLRSYSEDSLSEQHSESLRSITIEDDEYXKIDNILNFRRYRGRIQYKVKXKDLDRDDEXYYVDKGKFNDSEKVLKEFHKLYSNKPR
Ga0272435_100033250	F100079	N/A	MFKYRHFIHEQYINEKTLLKKEKHKQVSKEXLNYAVXLKV
Ga0272435_100033254	F055318	N/A	MLRDNEALCIDCMQSFHDHADFDNLNAYATSNLHADEKVK
Ga0272435_100033265	F029296	N/A	MSELLIFDHQQLKKIKQITEAQMNKHKXDVIYEVDDQVXLVFENIKITRSCKDLKDKQLNFYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSNDSLSEQHSEFSRSMIIEENEEHXEVNDILNFRRYKEKLQYKVKXIEIDHDDEXYYVDKEKFDDSKKVLNEFHKLYSNKSH
Ga0272435_100033267	F057010	N/A	MTYSSLSTHRSFRLIDSAIKNLRXLLENQIDQKNQSILKSNNKTTLSSIVEHRSSLDFFLLKHSFNSISSFFLIMPHLFKECFEASFFIVEDNDSFAEIMTSSMTMKALKKRCEELKARLQAREIISLSSIYSERSRSQKILDSSLFTDEKNSIXKNWYEKVQNKLKINVDLFSSKRVKLSYVHFRLFDDAAEITQSRCERDCFNSYKIVDELLKELSQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLRFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIREIKNREAMIKAQTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDRSLNFNSESDSKN
Ga0272435_100033271	F019260	N/A	MIQELKSISRINIKSKKYLNSELYIKEXENKLNQFIFKLISKLKLNTNHYLILKFHLLYEYSHLSRNAVAQALSHMIAQHNKLVMIEQLVVLLRQVFNDSNKQEIAQXFISALRMXNCIFIEYLFNFQQHIDAIEYDVVTXKFNLKNELFSKLKALLIQMNVSSLNYEQLIIKCQQLNSXYCITVQNLFKSKAVIHFIFVIFTVFVYLIKYATFLTDSKATISSLKDLMNLLIINMKKXNLLILEKHQHCMINHLCLYCDKSEH
Ga0272435_10003328	F004755	GAG	LSYIHSRLFNDAAEITQTKCKRNCVNLYRIIEDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLNYHEKQLIVNLKDKINSCLXFIXVNQLIQSDSLKEIHFYLIHLNNDQRVIQEIKNKLKCINNISKTIFHKVTVITQSIDHLKFDHLKSRDAILTNVKEANILVESCFIYHKSDHSSKKCFD
Ga0272435_10003329	F028367	N/A	LCKLDEILSKENYFEKSFLIDIYLIFQKXSFNLRFLIDSDSVIYMIIHFNLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKTITHKILLNLIIESYKKLTVLMLIADINHHEVILSKLXMNKNEILLNMQNDVIVFLNQLNTSISIFSISLNSKYSSXSRSTSFSLIT