Scaffold Ga0272435_1000330

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000330
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81246
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (26.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021452	Metagenome	218	Y
F025887	Metagenome	199	Y
F037509	Metagenome	167	Y
F057011	Metagenome	136	Y
F065269	Metagenome	127	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100033027	F065269	N/A	MTRSTELESELVSTTRYETRDAERESLLSQNXTASEEEGTNASLNIEEENINALLFNHEMIKISISTKLNA
Ga0272435_100033029	F021452	N/A	MPDDSFDFKSFTVDVILNSLEKIFKSFALIDTRVTDMTFIDESLMSELCERFDIQSISLSKSKLIESYDEISDRKLITHALYTSIMIQEHKNEMMSLLITRLD
Ga0272435_100033048	F037509	N/A	MILISIFIQIHLTDNKMSIKKFVYLMINNIERQNNIKKSIESTKTYDHVIAKEYIAQSVASVQIN
Ga0272435_100033049	F057011	GAG	LNFESQCIKRXXVXSIYIELXVXFXFKKLTISFRIIEEIKIIFLCSQIKVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFIVYMLIHDKLVNKIYQKLEIQFILLAKEKLIXDYDEKLVRKTITHKILLNLMIESHKKLTMSMLIVDIEHHEDEVILSKL
Ga0272435_100033051	F065269	N/A	MSIAHYDFQNVRRESLLSQNQTASEEEDINVSSDTEEKNMNILFFDHEIIKISISTELNA
Ga0272435_100033054	F025887	N/A	MSNDSFDFKSFIVDVILSSLEKIFKSFTLINTEVIDMTFIDESLMSELCECFNIQSISLSKLKLIXLYNEISDQKLITHALYTSIMI
Ga0272435_100033079	F069514	N/A	MQNDXAKLLLITEFVDNNALFSIIFLISFFLNKDFHSHMSFELDVIEYESSHECLQTTKVKNISEHMNKTLTFACEC