NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000320

Scaffold Ga0272435_1000320


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000320 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83201
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (23.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F007840Metagenome343Y
F013598Metagenome269Y
F032102Metagenome180Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_100032032F000597N/AMKDVLISSTTSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKLIIHVIYSNLTVQDHTMNTTSMLITRLDQHQMILEKT
Ga0272435_100032036F032102N/AMKIADLEKNNDQSIYKQILEINEIDENCTLLREAIARDEAQCEDIKLKNCRVQNEILYKDSQL
Ga0272435_100032037F013598N/AMNFIIDLSDSYDYNAILTVICRLSKERHYISCITDDEDITVEKTAEMLLQ
Ga0272435_100032042F007840N/AMINTIKRQNNTKEFIKSTARLIELLDDLQLIKYTSFISINRISNKESSLIARESNRSRESINSQIKQQK
Ga0272435_100032085F036036N/AMLISLIHHLFSCFDQSFISEDQSLVHLFRYILDLIDLQAFASAFILNDVRIETHMRMKALVNEEEDQEDD
Ga0272435_100032086F013598N/AMNFIIDLFDSYDYNAILTVICKLSKERHYISCIIDDEDITAEKTAEMLIQ
Ga0272435_100032089F000597N/AMKDVLISSMMIMSDDSFASESLIIECVLSSNEISYSLKSLINIKAADYSFINEVIAQIVYDQLQIKLLTLIKVKSIQEFDDHYAKKLITHVIYSNLTVQDHMIDTASMLIT
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