Scaffold Ga0272435_1000313

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000313
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84832
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (30.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F019584	Metagenome	228	Y
F028978	Metagenome	189	Y
F044227	Metagenome	154	Y
F094620	Metagenome	105	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100031311	F044227	N/A	MQLQLRSSDDETCTHALFELIASAIKNAMRRRLFKLLNNCRYHEESQSSCKNDDENEASEAI
Ga0272435_10003132	F019584	GAG	MIKAXTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLINVKENDLLIENCFLCHKSDHTFKECSNRSFRINTLDNEFDHSLNFDSESDSKN
Ga0272435_100031320	F028978	N/A	MKIADLKEKENNESIYXLILEVNRINKNYILFREVVLKDEAQYEDIKLRNCRVQNEILY
Ga0272435_100031335	F007840	N/A	MINAIERQNNTRKSIKSTAKLIELLDNLQFIKYASFISINRISDKESSLIARESNRSRESINSQIKQQK
Ga0272435_100031336	F096305	N/A	MSRFFKECFEASFFIVKDNDSFTEIITSSMTMKALKKRCKELKARLQAREIISSLSIYFERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSEXVKLSYVHFRLFNDAAEITQSRCERDCFNLYKIVNEFLKELS
Ga0272435_100031337	F019584	N/A	MIKAKTTKQIIFAEESVKATCKIIEMKMTDQSKSRDAVLTNVKENDLLIENYFLCHKSDHTSKECLNKSFRINILNDEFDHSLNFNSESDSKN
Ga0272435_100031342	F094620	N/A	MISFYFNKDFHSQMSFNSDTTNYKTTRQCIEARKIDDIITXMSELLIFDHQQLKKIKQIIEAQINKHKRDVIYEVNDQVXLVFENIKIIRSCKDLKDKQLNLYSITVKVEIFYHLQLSRSMKHIHSMFSSKCLQSSSNDSLLKQHSELSRLIIIEENEKHXEVDDILNFRRYRERLQYKVKXIEVNHDNEXYYVDKEKFDDLKKVLNEFHKLYLNKFH