Scaffold Ga0272435_1000297

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000297
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88015
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (42.35%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100029714	F059497	GAG	MSIKDIDRKIIYNTQCKLDVINVFSIDETTQNLEDIKVKLSLKYQNFLNVFDQAQADKLSSHHSYDHKIKLTSDVMSSCCQAY
Ga0272435_100029718	F044226	N/A	MIEFSNNVNTFSIISMIFFYFNKEFNSRMSFNSDTTDYEITHERIEARKADNIVI
Ga0272435_100029722	F000597	N/A	MLNDFFASESLTTECILSSNEISYSLKSLINIEAADYSFIDEVIAQIVYDQLQIKSLTLIKAKSIREFDNYYAKKLIIHAIYLNLTVQDHTIDIASMLIT
Ga0272435_100029726	F017941	N/A	MKIADLEKNNDQSIYKQVLDVNEIDDNCTLLREAIARDEAQYEDIKLKNC
Ga0272435_100029727	F013598	N/A	MNFIIDLSDSYDYNVILTVICRLLKERHYISCITDDEDITVEKTAEMLLQ
Ga0272435_10002973	F001253	GAGG	VTFIKDAMKDVLISSTMSSLNDFFASKSLTTECVLSSNEISYSLKSLIDTEAVDYSFIDELIAQNVCDHLQIELLSLIKLKSIRRFNDHYAKKLITHAIYSNLTVQDHMKRFVSILTTRLSQHQMILEKT
Ga0272435_100029738	F019584	GAG	MIKAQTTKQIIFAEESVKATRRIIETKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSSNFNSESDSKN
Ga0272435_100029740	F059497	GAG	MSIEDINRKIVYNTQCKLNVLDVAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVDKLSSHCSYDHKIKLTNDATSFRCRAY
Ga0272435_100029744	F037509	N/A	MILISLLIQIHSIDNETSIKKFVYLMINDIERQNNIKKSIKSMKIYNHMIVKEFIAQSIASVQID