Scaffold Ga0272435_1000259

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000259
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96038
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (21.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021216	Metagenome	219	Y
F024448	Metagenome	205	Y
F026450	Metagenome	197	Y
F037509	Metagenome	167	Y
F046102	Metagenome	151	Y
F049323	Metagenome	146	Y
F075493	Metagenome	118	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10002593	F049323	N/A	MMKEMNEESAEQTRRSAENDSKECARFKLDIASXLALIKLIRVRSELXLIQTCS
Ga0272435_100025933	F026450	N/A	MFCLFKECFEASFFIVENNDSFAEIITSSMTMKALKKRCEELKARLQARKIISSSSIYSEHSRFQKILDSLLFTDEKNSIXKNXYEKVQNKLEINVNLFSSEQVKLSYVHFRLFNDATEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYT
Ga0272435_100025951	F075493	N/A	MQSVQAMHEYMLRCLMTSFAVASXAIHVXNISRVQISIQIYALNSDVHCKSVFYFLKIIMHLYHLIAQMQSLCXDCIDVCDAFSVLFSSLISLILVILLYCDAIACXNHCEEESASSASXLYLCIFLNENIQKYYFLDDC
Ga0272435_100025954	F046102	N/A	MKDVLISSTTSSSNDLFVLKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNFYDHLQIESLSLIKLKSIRKFDDHYAKKFITHAIYLNLTVQDHMKRFASMLITRLSQHQMILEKTXMNKIEVTIDMRNDRLQFSDSKTHIDASSISLSVIKKIAIEQKSSTSTQILKRSISSVIT
Ga0272435_100025957	F021216	N/A	MKSRMKSNAMRREHHELEKAFRNHERSDNNHSNDTLNEHTKSISSCDVIKESDERERE
Ga0272435_100025963	F037509	N/A	MILISIFIQIHSTDNEMSIKKFMYLMINDIERQNNIKKLIKSMKTYNHMIAKESIAQSIASIQIN
Ga0272435_100025966	F083460	N/A	MKLSDSQAYSDALLELNASLIKYAMKHQLHELLNHHFNHEKSQDNSENDDENKAAEAV
Ga0272435_100025970	F024448	AGG	VTFIKDAMKKMLISSTISMSDDSFASESLTTECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKLIQEFDDHYVKKLIIHVIYLNLTVQDHTIDTAFMLITRLDQHQMILEKTXMNKINLVIDMRIDFLXFSIFISNHKLIVLLTSNKTIMKQKSLTSTHILKRSFTTSQFSLKSLSFSQLN