Scaffold Ga0272435_1000243

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000243
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99646
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (51.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013598	Metagenome	269	Y
F025887	Metagenome	199	Y
F065269	Metagenome	127	Y
F079402	Metagenome	115	Y
F098339	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000243106	F065269	N/A	MTRSTELESELVSTTCYETRNAERESLLSQNRTASEEEDMNASLNIEEENTNALLFDHEMIKISISTKLNA
Ga0272435_1000243108	F079402	N/A	MRNKLKMNKNHFSIKEMKIAYVKSRVSETMIKHIAFRMRNTITNSFLEAEEILSIINKMYDNLN
Ga0272435_1000243115	F013598	N/A	MNFIIDLSDSSEYNAILTIICKLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272435_1000243116	F098339	N/A	MIEFVDNNVLSSVIFLTLFFMNKRFHPRISFDSDIIEYESIRERLQIDRVKNISEQMNKTLIFAREALIKTREQMVNQANKHRKKVNYEIKLKMFLNE
Ga0272435_1000243118	F025887	N/A	MSDDSFDFKSFTVDVILNSLEKIFRSLALIDTKVIDMTFIDESLMSKLCKRFDIQSILLSKSKLIRSYDEIFD