Scaffold Ga0272435_1000222

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000222
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104212
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (25.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F017941	Metagenome	237	Y
F021452	Metagenome	218	Y
F024448	Metagenome	205	Y
F036504	Metagenome	169	Y
F069514	Metagenome	123	Y
F074202	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100022255	F017941	N/A	MKIADLKKNIDESIYKQILETNEIDENCMLLHEVILKDEAQYEDIKLRNC
Ga0272435_100022259	F036504	N/A	VIFRLEDDAHQQIYAKHYVDVFSLYQSLSELLKHLKEIYEDQNLIXKYHHEYVALKQLNKFFSSFYSEFTRIFSFLNYDDITLMNNIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLHDEQXTVKLIAALKKRFVSLLTSASVSTTNYVQLTTFFILESEXSRMSIICFNCKVLNHLSKNCFQLKTSTSTFCAFISCLNEIIMSKEEKKLFTEKLKNKTKN
Ga0272435_100022261	F074202	N/A	MKTVDCKMNCKTIYMSFLLMFSCLLCSDNAFNLALFLNNDLFLKLVISKLRLHVEIKLNFKEEVILRCSFFIAKDDDLDSLFDLKTAINFIKFLXFIIFCNNXLFFFNLFLSIKCDVTQLKXADAENXAFKSEVFINLAVVDLAVLNNVNNKSFLKFENLDCKDDMKRSTLSVLSFFSSDIVN
Ga0272435_100022271	F021452	N/A	MPDDSFNFKSFTIDVILSSLEKIFRFLALINTEVTDMTFIDESLMSKLCERFDIQSISLLKSKLIQLYDEISDQKSITHTLYTLIMIQEHKNEMMLLLITRLDQHKIIIENLXLKRN
Ga0272435_100022273	F003820	N/A	MKLFSYLEYDDRILMNDLQNKINNRLQNALSICSKDFITLHHLKSFLQSMNNKQRVNYQLRSERCMIIVKVTVVSDKFAATSLSAMMTSIVEYVKSTIFFTSESVRLSIVCYICKVSDHLFKNCSQNKINTSTFHAFISRLHEIIISKNKENEKMSFENSEAKN
Ga0272435_100022274	F024448	N/A	MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKLLIDIEAANYSFIDEVIAQIVYDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDSTIDTASMLITRLDQHQMIFEKTXMNKINLVIDMQIDSLRFSNFNPTSQKLIALFSSNKSITKRKSLTSTHILKRSFTFVTS
Ga0272435_100022290	F000597	GAG	VTFIKDVMKDVLISSTMSSSDDLFALKSLTIECILSSNEINYSLKLLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFNDHYTKKLITHVIYLNLTVQDHTIDTAFMLITXLNQH
Ga0272435_100022295	F069514	N/A	MQNDXAKLLLMIEFINNNALFSIIFSTSFFLNKDFHSHMSFEFNIIEYESFYERLQMTKVENIFEHMNKTLKFACESLVKTXKQMMKQVNKYRKEVDYKIESKIFSEXKKHHYSEIFQEVKX