Scaffold Ga0272435_1000209

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000209
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107989
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (57.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F017767	Metagenome	238	Y
F032102	Metagenome	180	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000209100	F001253	GAGG	VTFIKGAMKDVLISSTTSSSNDLFASKPLTTECVLSSNEISYSLKSLVDTEAADYSFIDELTAQNVCDHLQIESLSLIKSKSIRRFDDHYAKKLIIHAIYSNLTVQDYMKRSVPMLITRLSQHQMILEKT
Ga0272435_1000209104	F001253	GAGG	MTFIKDVMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFVSMLITRLNQHQMILEKT
Ga0272435_1000209108	F032102	N/A	MKIADLEKNVSESIYKQVLDANEIDENCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272435_1000209114	F017767	N/A	MTFIKDAMKDVLISSTMSSSDDFFALKSLTIECILSSNEINYSLKSLIDIEAADYSFIDELIAQNVCC
Ga0272435_100020988	F006206	N/A	LKENYFEKSFLINASFISQSNSFSLRSLINSDFIIYMLIHDKLVDKVCQKLEIQFISLAKEKLIQDYDEKLVKKTITHKILLNFTIKSYKKLTMSMLIADIKHHEAILSKF
Ga0272435_100020990	F059497	GAG	MFIENIDRKIIYNTQCKLDVINIFSVDETTQNLEDIKVKLSLKYQNFLDIFNQAQADKLSSHHLYDHKIKFTSDATSSHCQAY
Ga0272435_100020992	F044226	GAG	MIEFSENFNIFLIISMTSFYFNKSFHSRMSFDSDTTDYKTTYERLKVKKADDIVI
Ga0272435_100020994	F008668	GAG	MIEFHNNFNIFSITSMILFYFNKEFHSRMSFDSDTTDYEMTREQLEARKTDDIIIQMKELLSFDHQQLKKTKLIIEV