Scaffold Ga0272435_1000206

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000206
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109503
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (31.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F033266	Metagenome	177	Y
F038484	Metagenome	165	Y
F039410	Metagenome	163	Y
F055317	Metagenome	138	Y
F061400	Metagenome	131	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100020665	F039410	N/A	MSFKFXVISLIEKTFKAFKLHXVLYAIFLLMFIMNRAKTLILFFFERFNSVLNEAMFMLXIKNDFFXAVIEINRLSIIEVLVXVIEENKVDRDQLECFELSEIEKIEIEVFNXFEKTMTSFRIFSNISFLFIQSLLNMTSXXLILTININTVNFLXLLMMRLNRILXVIVFLDIFSS
Ga0272435_100020667	F033266	N/A	MLSHSFTEERSEEFRNRFFQISDADSSKSRMKSLSAASFIHEDDESFAETIISFVFYEIXKTRSLVLDKETDRLYKLNKQQEDEIKELKTRLQTKENTSSDFIYSERSKSQKIPDSSLFTDEKNST
Ga0272435_100020677	F078020	N/A	MRFFFDRLINAXKDAVLILNIKKFFFEAVEASCXSTLRTELIEEFDDHDHFECEALTDIKKTEMKAFNXFKKTMTSFCISSSISFLFIQNFSNMTSXXSISAINIETVNFLXLSIVRLNRILXIMIFFVSFSSYSLINFSLASHMSXISSFXHIXSTNFVXIKM
Ga0272435_100020680	F007840	N/A	MINVIERQNNTRKSIESTAKLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINFQIKQQKQLYLLLLSIALRSISFF
Ga0272435_100020682	F055317	N/A	MKQRDKSEIQQLKAKLQAFNAITVNVIIIAFSIIIYFKXSKYHKILDSSMFIDEKNSTXENXFLDIREKLTINVDIFSNELYKLSYIHSRLADDIVEVTQVRCNLNCNNLYLTVNELLEKLAQSFHDSDKKDNYRRKYINLIQKSKKFSNFFNQFQRLYIYLKYQKNVLVIDLKNKINSRLXIFXTAQMKSLIKLSDIQNYLIRLNNEHKAVREIKNKLLKHDDSKIIISRVIIAVQSSTLKSDXSKSRSAVLTSIKNANVLVEICFVCLFQTCLNRSEFRSNSNQFD
Ga0272435_100020684	F038484	N/A	MCIAKVLSAFXRSSCIFIILLLRCNLCAEIALMFATRSLYFFHRXFHXSLXYCVIAMLSLVEIIVKKRMHHLHLNCIFAFSXMKTFRSIIFLMMSNXEMTXITFVKXTCISLHAYLISYVQLLIQLCNVILFYNMFKXTCSELIYVFVSKVLMLTLLNISVTXCRVXFXSVSNLHSLLNSSFFLSRXCQTDASNAISDLITIEYTCFAFVKIASHVKTLRQLSVSIFVMXFVFIYQICTSHCSFMFSCIFRTCTFNFNLITELSIYMLIIMSNLFNFLVKCVSLLKIYCIHCMQHT
Ga0272435_100020693	F061400	GAG	MTLESVEQIMLLKYYNHIMNLNSEKTIIKAXNIYCREKDEDNAINESDDFFKTDLQNVLCFINV