Scaffold Ga0272435_1000180

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000180
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113684
• Total Scaffold Genes: 118
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (24.58%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F032102	Metagenome	180	Y
F048017	Metagenome	148	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000180102	F048017	N/A	MKCIELLIQMFIDHQTLKIFMKNKQLSQXQVNYLNILLKFNFQIIFKSDKINTKVNALIKMLLANIFESAQHFEDRFQTILTLDKVNVLSVESKANLYQXIYMINQTDELCSKYKQAINDNKLKFHIIKLKNCKIINDILFRKDLLXIFENMHTKLLQEVHDQSLIFHLDNKXIIDLVQRFYYXSDHQATI
Ga0272435_1000180104	F005901	N/A	VISRLEDDAAEHIFAXHHHDALHSYISIYKLLKHLEEIYENQNKNRKCHHKYNVLKQADKLFNVFYFNFMKLFSYLNYNDCTLMNDLQNKINNRLQNALSVCFEDFASLHCLKIFLQDVNNKQRVNYQLHSQFCTVIIKVTVVSDKCIATSLSVMTLIINYVKSIIFSIFKSDXVKSSIICYICKTSKHLFKNCSQNKINTFASHAFTSHLHEIIISKNKENKKMSFKNSETKN
Ga0272435_1000180105	F000597	N/A	MKDVLISSMMSMSDDSFASESLTIEYVLSSNEISYSLKSLINIEAADYSFIDEVTVQIVYDQLQIEFLTLIKAKSVREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQH
Ga0272435_1000180109	F032102	N/A	MKIADLKKNNDQSIYKQVLDANEINKNCMLLREAIARDEVQYEDIKLKNCXTQNEILFHDSQL
Ga0272435_1000180117	F007840	N/A	MIDAIKRQNNTREFIESTARLIELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINSQIKQQKRLYLLLSSIALRSISFF
Ga0272435_1000180118	F104131	N/A	MSRLFKERFEASFFIVEDNDSFAEIITFSMTMKALKKRYEELKARLQAREITSSSSIYSERSRFQKIFDSLLFTDEKNSI
Ga0272435_100018058	F086375	N/A	MFTLFINLKSIASXNHDENXFNEIKEYYKRQNNNHVIIFKXLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQE
Ga0272435_100018071	F076668	N/A	MTCLLLTSSFLAYASAHKTFKSSMHSTDHYVIKETSVFKFTLTTKKIMHMSNVLFTDILMLCNRKDVTNQTLLCCVKFENIKRLQKISFSKXSLKDXLERLCMIMLKRTCYNMIFAFSALFXVLFKKSLKTLXFSLXKVSALFFCIITFVVEFSLTFCFMQTST