Scaffold Ga0272435_1000175

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000175
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115236
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (50.60%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_10001751	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDIILMNNIQNKINNRLQNALLVCLIEFSLLDKLKIFLQDVNNKQQVNYQLRDE
Ga0272435_100017513	F017767	GAG	MMKEMLISSMMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCD
Ga0272435_100017518	F032102	N/A	MKIADLEKNNDQSIYKQILETNEIDENCTLLREAIARDEAQCKNIKLKNCRVQNEILYKDSQL
Ga0272435_100017527	F019584	GAG	MIKARTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFNSESDSKN
Ga0272435_100017532	F006206	N/A	VQIIFLCNLDEILSKKNYFDKSFLVDALLISQNKSFSLRSLIDSDSAVYTIIHINLVAKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272435_100017534	F008668	GAG	MIEFSDNFNIFSITSMIFFYFNKEFHLQISFDSDTNDYEKTCERLEARKTDDIVIQMKKLLSFNHQQLKKTKLIIKVQINKHK
Ga0272435_100017535	F036036	N/A	LFSCFDQSFASKDQCLIHVIEYIFNLSDLQTFASAFILDDVEIKVHTRMKALVHEEENQEND
Ga0272435_10001755	F017941	N/A	MKIADLKKNIEKSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272435_10001756	F013598	N/A	MNFIINLSDLSEYNVILTIICRLLKERHYISCITDDEDITVKKTAEMLIQ