Scaffold Ga0272435_1000167

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000167
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118706
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (18.94%)
• Novel Protein Genes: 23
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Associated Families: 16

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F024448	Metagenome	205	Y
F028367	Metagenome	191	Y
F029296	Metagenome	188	Y
F033265	Metagenome	177	Y
F037509	Metagenome	167	Y
F052973	Metagenome	141	Y
F055317	Metagenome	138	Y
F057011	Metagenome	136	Y
F059497	Metagenome	133	Y
F065268	Metagenome	127	Y
F079402	Metagenome	115	Y
F083460	Metagenome	112	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000167101	F007840	N/A	MINAIERQNNTREFIKSTARLIELLDDLQLIKYTSFISINRISDKESSLIARESNQSRESINFQIKQQKQLHLLLSSITLRSISFF
Ga0272435_1000167104	F052973	GAG	MFRDCVRLEKDVFVTXKEDDVDEQDVDEVKECXESKKVLKK
Ga0272435_1000167107	F028367	N/A	VKIISLCNLDEILLKENYFDKSFLINAFLISQKQSFSLHSLIDSDSVVYMIIHFNLVNKVCKKLRIQSISLTKEKLIKDYDEKIFKKIITYKILLNLIIKSHKKLIVSMLIADIDHHEVILNKLXMNKNEILLNMQNDVIVFLNQLNTFISVFSISLNSKHLSXSRSTSLSSITQTKISTMLRRLV
Ga0272435_1000167108	F055317	N/A	MTSKNTSNKDKAFVDFLQQTRSQDFSSIVDSQHASSFIAFNELNAEIIIHDDIKVXKKRIYVLNRETDHLIEMKQRDKSEIQQLKEKLQAFTAIIVNVIITALLIVIYFKXSKYHKILDSSMFTDEKNSTXENXSLDIREKLAMNVDIFSNELYKLSYIHFQLANDVVEVTQIRRDLNCDNFYLTVNELLKKLAQSFHDSDKKNNYRREYINLIQESKKFSNFFNQFKRLYIYLKYQKNVLVVNLKNKINSHLXIFXTTQMKSLIKLSDIRNYLIRLNNEHRAVXKIKNKLLKCDDSKIIISRAIIAVQSSTLKSDXSKSRSAVLTNVKNANVLVEICFVCHKSDHSFKECSNXSIKVNAVDENYDCFELNTESEFESKN
Ga0272435_1000167115	F029296	N/A	MSKLLIFNHQQLKKIKQIIEAQMNKHRRDVIYEIDDQVXLTFKNNKITRSCKDLKDKQFNLYLITVKVEIFYHLQLSRSMKHIHSMFSSKYLXSSSNDFLSRQHSELFRSIIIEKNEKHXEVNNILNFRRYKERLQYKIKXIKINHDDEXYYVNKEKFDDLKKVLNEFHKLYLNKLH
Ga0272435_1000167131	F002432	N/A	MSNDXAKXISIIEFSDNVNMFSIISMISFYFNKEFHLQISFDSDTTDYKITCEXIKTKKADDIVIQMKELLNFNRQQLKKTKLIIKAQINKHRXNVIYKIDDQIXLSFKNVKIMKSCKNLKDKQLNLYSIIVKVETFYHLCLFTSMKHIHLMFSLKLLXSYSENSLSEQYSESLRSITIENNEHXKIDNILNFKRYQGXIQYKVKXKDLDRNNEXYYVDKEKFNDSEKVLNEFHKLYLSKLR
Ga0272435_100016722	F037509	N/A	MILIFILIQIHSTDNETSIKKFVYLMINDIERQNNIKKSIKSMKTYNRMIAKESIAQSVALVQIN
Ga0272435_100016725	F057011	N/A	LIYIKLXVQFXFKKLVISFKIIEEINIISLCSQIEVLLKENYFEKSFLINASFIFQNNSFSLCSLIDSNFVIYMLIHDKLVNKVCQKLEIQSILLAKKKLIXDYDEKLARKTITHKILFNLTIESHKKLTMSMLITDIEHYEAILSKLXMNKNEILLNMKHDTIIFSE
Ga0272435_100016727	F059497	GAG	MFIKDIDRKIIYNTQCKLDVINIFSVDEMTQNLEDIKVKLSLKYQNFLDVFDQAQADKLSSHHSYDYKIKLTSDLTSSCYQAYXMSFYKF
Ga0272435_100016732	F002432	N/A	MSFDSDTTNYKTTHECLEARKADDIIIQMKKLLIFDHQQLKKTKQIIEAQINKHKXDIIYEVNDXVXLFSRNIKTTRSCKNLKDKQLESYQITVKVKIFYHLCLLISMKQLHSMFSSKLLCSCLNDFLSEQHSKSSRFLTIKDDEHXKINDILNFKCYXDXIQYKVKXIKLNQDNEXYYVDKEEFKSLKEVLVEFHKLYSDKSH
Ga0272435_100016740	F083460	N/A	MQLQIKSSDSQAYSDALLELNASSIKYAKRCRLHKLLNHHLNHEESQSNSENDDENKAAEAA
Ga0272435_100016746	F028367	N/A	VKIISLCNLDEILLKENYFDKSFLIDALLILQNKSFSLRSLIDSDSVVYMIIHINLVDRVCKKLRIQSISLTKDKLIKEYDEKISKKTITHKILLNLIIESHKKLTVSMLITDINHHEVILEKSXMNKNEILLNMRIDVIIFLNQLNTFISIFLISFNLKHSSXLXSTLFTFTS
Ga0272435_100016747	F055317	N/A	MKVXKKRIYVFNRETDHLVKMKQQDKSEIQQLKAKLQAFTAITVNVIITAFVIVIYFEXSKYHKILDSSMFTDEKNSTXKNXSLNIREKLAMNVNIFSNELYKLSYIHSRLADDVVEVTQIRRDFNCDNLYLTVNELLEKLAQSFHDSDKKDNYRRKYINLIQESKKFSNFFNQFQRLYIYLKYQKNVLVVDLKNKINSCLXIFXTAQMKSLIKLSDIXNYLICLNNEHKAVQEIKNKLLKHDDSKIIISRATIAVQSSTSKSDXSKSRSAVLTSVKNADVLVETCFVCHKSDHSFKECLNXSIKVNAVNENYDHFELDTESEFESKN
Ga0272435_100016755	F037509	N/A	MILISIFIQIHSTDNEMSIKKFVYLMINDIKRQNNIKKSIKSMKTYDHVIAKEFIAQSIASVQIN
Ga0272435_100016760	F037509	N/A	MILISIFIQIHSIDNEMSIKKFVYLMINDIERQNNIKKSIELTKTYDRVIARESIAQSVASVQID
Ga0272435_100016765	F008115	N/A	MLXNVYRLHDLSSSIVSNRDSQFISIMXQSLCKXLRITTSLSTAYHSEIDNQSKXANQDIERELRIYCNYMQNDXAKXLSMMKFSENFNIFSIISMISFYFNKEFHSXMSFVSNTTDYETTYKRLEARKVDDIVIQMKELLIFNHQQLKKTKQIIEAQINKHKXDVIYEVNDXVXLFSRNIKTTRSCKNLKDKQLESYQITVKVKIFYHLCLLISMKQLHSMFSSKLLRSCLDDFLSEQHSESSKSLTIEDDEHXKIDDILNSRRYXDXIQYKVKXTRLDRNDEXYYVNKEEFENLKEVLVKFHKLYSDKSH
Ga0272435_100016769	F002432	N/A	MISFYFNKEFHSRMSFDSDTTDYEITRERIEARKANDIIIXMKKLLNFNHQQLKKTKLIIEAQINKHRRNIIYKIDNQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVETFYHLHLFTSMKHIHSMFSSKLLXSYSENSLSEQHSKSLRSITIKDDEHXKINNILNFRRYQDXIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272435_100016772	F055317	N/A	MKQXDKNKIQQLKAKLQAFTAITINVIITAFLIVIYFERFKYHKILDSLMFTDEKNSTXENXSFDIRKKLAMNVDFFSNELYKLSYINSRLADDVIKVIQVRCNFNCDNFYLTINELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVINLKNKINSHLXIFXTAQIKSLIKLSDIXNYLIHLNNEHRAVXKIKNKLLKRDDSKIIISKATIAVQFSALKSDXSKSRSAVLTSIKNADVLVEICFICHKSDHSFRECSNQSVKVNAVDENYDHFKFNTESEFKLKN
Ga0272435_100016776	F024448	GAG	VTFIKDVIKDVLISSTMSSSDDLFASKSLTTKCVLSSIEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIKSLTLIKAKSIREFDDHYAKKLITHAIYLNLTVQDHTIDTASMLITRLSQHQIILEKTXMNKIDLVIDMQINSLXFSNFIFSQKSIVLFSSNKTITK
Ga0272435_100016778	F033265	N/A	MTFQSKKQFESCYEMFIDCMIYSVLLFXTETLNSYQLCEKVFANDXESQLVYSQFIIFRSTINXNESIKTLNANLESTAITCRTTELNEYLXXNSATISIFSXSLQXFSSTLIKNFTLKXVSIQIXLTMKQLMNNLKLEKQMILSFKXKSYXALIINNXKRQS
Ga0272435_100016779	F065268	N/A	MIRSTELKSESLSIACYELQNAEKESLLSQNXTTSEEEDMNASLNTEEKNMNTLLFNHKIIKISISTELNAXISIHEADDLVVFIKYIC
Ga0272435_100016781	F079402	N/A	MQNKLKMNKNHFSIKEMKIAYVKSXISETMIKHIALKMKNIITNSFLEAKEILLIINKMYDDLNXYHTT
Ga0272435_100016784	F098340	N/A	MIEVVVYQTLVKNKKIKIFFLIISEINKALNSVEDFAKLNKMIFVMSLNELKKKLLIVYHDFLNIFNKEKIT