Scaffold Ga0272435_1000141

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000141
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127532
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (44.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F021452	Metagenome	218	Y
F032102	Metagenome	180	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000141135	F013598	N/A	MNFIIDLSDSYNYNVILTVICKLLKERHYVFCIIDDEDITVEKTAEMLLQ
Ga0272435_1000141136	F017941	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREVIAKDKAQYKNIKLKKC
Ga0272435_1000141139	F000597	N/A	MSDDSFASESLTIKCVLSSNEISYSLKSLIDIEAADYLFIDEVIVQIVYDQLQIEFLTLIKAKSIREFDDHYAKRLITYVIYLNLTVQDHMIDTASMLITQLNQHQMILEKI
Ga0272435_1000141143	F021452	N/A	MSDDSFDFKSFTVDVILNSLEKIFRSLVLIDTEVTDMTFIDESLMSELCKRFNIQSISLSKSKSIQTYDEISDRKSITYALYTSIMIQEHKNEMMFLLITRLDQHKIIIENF
Ga0272435_1000141149	F008668	N/A	MILFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVIQMKELLSFDRQQLKKTKLIIKVQINKHRRDVTYEVNN
Ga0272435_100014124	F094626	GAG	MMKQVNKYKKEVDYEIKSKMFLNERNIITARFFKKLNDKMLDSFINLDFINSSYKLKLSKFMHIYDVFHSDLLCSVVDDFLSDQKNESSDLIVINDEDE
Ga0272435_100014125	F069514	GAG	MIEFIDNNALFSVIFSISFFLNKDFHSHMSFELDVSKYESFHECLQMTKVKNISKHMNKTLKFAHELLVKT
Ga0272435_10001416	F000597	N/A	MSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKFIREFDDHYVKKLITHVIYSNLTVQDHTIDTAFMLITRLNQHQMILKKT
Ga0272435_10001419	F032102	N/A	MKIADLEKNISESIYKQILEINEIDENCMLLRKAIARDETQYEDIKLKNCRIQNEILYKDSQL