Scaffold Ga0272435_1000130

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000130
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136292
• Total Scaffold Genes: 186
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (51.08%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F007840	Metagenome	343	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F019584	Metagenome	228	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F059497	Metagenome	133	Y
F084912	Metagenome	111	N
F087980	Metagenome	109	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000130140	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQYLIYVIEYIFNSSNLQTFVSAFILDDVRVEAHTRVKAFVHEEENQEDD
Ga0272435_1000130141	F013598	N/A	MNFINNLSDSYDYNIILTVICKLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272435_1000130142	F017941	N/A	MKIVDLEKNNDQSVYRQVLDVNKIDENCTLLREAIARDEAQYEDIKLKNC
Ga0272435_1000130147	F000597	N/A	MKDVLISSTISMSDDSFAFESLTTECVLSSNEISYSLKSLINIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTAFMLIT
Ga0272435_1000130150	F087980	N/A	MKLSHNLLIDDECAVEQFAQSVIENSVEIFREMQELQNQVQQHDVITLFSFIVFSSSVYIKLNSQSLATIAQIIAQILNNQSLFIIHSSANSVAVIIASRFKKLLDISEYEKDKD
Ga0272435_1000130155	F001253	GAG	VTFIKDVMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFINELITQNVCNHLQIESLSLIKLKSIRKFNDHYAKKLITHAIYLNLTVQDHMKRFASMLITRLDQHQMILEKT
Ga0272435_1000130160	F104131	N/A	MSRLFKECFEASFFIVKDNNSFAEIITSSMTMKALKKRCKELKAKLQAREIILLSSIYFKRSRFQKILDFSLFTDEKNFI
Ga0272435_1000130162	F008668	GAG	MMKFSDNFNTFSTILMISFYFNKDFHSRMSFDSDTTDYKMIHQRIETRKIDDIVIQMSKLLIFNHQQLKKIKQITEAQMNKHRRDVIYEVDDQV
Ga0272435_1000130163	F059497	GAG	MSIKDIDRKIVYNTQCELNVLDVAFIDASAQNLEDIKVKLSLKYRDFLDVFDRAQVDKLSSHRSYDHKIELTNDVTSSRC
Ga0272435_1000130165	F019584	GAG	MIKAQTTKQIIFVEESVKATRRIIEMKMIDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFDSKSDSKN
Ga0272435_1000130170	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNFIRKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYNDITLMNDIQNKINNRLQNTLSVCLIEFSSIDKLKIFLQDVNNKQ
Ga0272435_1000130171	F001253	GAGG	VTFIKDVMKDVLISSTMSSLNDLFASKSLTIECALSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHTIYLNLTVQDHMKRFISMLITRLSQHQMILEKT
Ga0272435_1000130174	F032102	N/A	MKIADLEKNVSESIYKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNCRIQNEILYKDSQL
Ga0272435_1000130183	F007840	N/A	MINAIKRQNNTRKSIKSTARLIELLDDLQLIKYTSFISINRISDKESLLIARESNESRESINLQIKQQK
Ga0272435_1000130185	F084912	N/A	MKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSSNFNSESDSKN