Scaffold Ga0272435_1000113

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000113
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144425
• Total Scaffold Genes: 204
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 109 (53.43%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F019584	Metagenome	228	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y
F059497	Metagenome	133	Y
F061402	Metagenome	131	Y
F079402	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000113120	F061402	N/A	MIEFVDNNAILLSIEQSTFFLNKSFHSHMSFDSNSIEYEITRARIEADKAKNIFEHMK
Ga0272435_1000113125	F025887	N/A	MPDDSFDFKSFTVDIILNSLEKIFRSFALIDIRVTDMTFIDESLMSELCEHFDIQSISLSKSKLI
Ga0272435_1000113126	F079402	N/A	MRNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALKMRNMITNSFLEAEEILSIINKMYDDLNRRHTTQQQFLKLYQNKIFFHEF
Ga0272435_1000113128	F059497	GAG	MSIEDIDRKIVYNIQCKLNILDVAFINATAQNLEDIKVKLSSKYQDFLDVFDRAQVDKLSSHRSYDHKIELTNNVTSFRCRAY
Ga0272435_1000113129	F019584	GAG	LIQFSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAQTTKQIIFAEESYKATRRIIETKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECSNRSFRINALNDEFDHSLNFDSESDSKN
Ga0272435_1000113132	F007840	N/A	MINAIERQNNTRESIESIARLIELLDDLQLIKYASFILINRISDKKSSLIARESNQSRESINSQIKQQK
Ga0272435_100011315	F059497	GAG	MSIEDIDRKIVYNTQCKLNVLDVAFIDASAQNLEDIKVKLSLKYQNFLDVFDRAQVDMLSSHRSYDHKIELTNDVTSSRCRAY
Ga0272435_100011316	F019584	GAG	MIKAQTTKQIIFVEESVKAIHRIIEMKMTDQSKSHDVVLTNIKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDCSLNFNSEFDSKN
Ga0272435_100011318	F007840	N/A	MIDAIERQNNIRESIESTVRLIELLDDLQLIKYASFTLINRISDKESSLIARESNRSRESINFQIKQQK
Ga0272435_100011320	F032102	N/A	MLNRMKIADLEKNVSESIYKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272435_100011321	F013598	AGCAG	MNFIINLSDSYDYNAILTVICRLSKERHYISCIIDDENITVEKTAEMLLQ
Ga0272435_10001134	F001253	GAG	VTFIKDAMKDVLISSTMSSSNDLFVLKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFNDHYAKKLITHAIYLNLTVQDHMKRFAFMLIT
Ga0272435_10001135	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYNNIILMNNIQNKINNHLQNALSVCLIEFNSLDKLKIFL
Ga0272435_10001138	F037508	N/A	VIFRLKDDADQQIYAKHHVDAFSFYQSLSEVLKHLKEIYEDQNFIQKYHCKYVVLKQLNKSFSSFYSEFTRIFSFLNYDDIILMNNIQNKINNHLQNVLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLCDEQ
Ga0272435_10001139	F001253	GAG	VTFIKDVMKDVLISSKMSSSNDFFALKSLTTECVLSSNKISYSLKSLIDIEAADYSFIDELIAQNVCNHLQIESLFLIKLKSIREFNDHYAKKLITHAIYLNLTVQDHMKRFIFMLITRLNQHQMILEKT