Scaffold Ga0272435_1000109

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000109
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148098
• Total Scaffold Genes: 183
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 102 (55.74%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F037508	Metagenome	167	Y
F044226	Metagenome	154	Y
F059497	Metagenome	133	Y
F061401	Metagenome	131	Y
F061402	Metagenome	131	Y
F079402	Metagenome	115	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000109145	F025887	N/A	MSDDSFDFKSFTVDIILNSLEKIFRSLALIDTEVTDMIFIDESLMSELCERFDIQSILLSKSKSI
Ga0272435_1000109149	F061402	N/A	MTEFVDNNAISSSIEQLMFFLNKNFHSHMSFDSNSIEYEITRARIEADKAKNIFEHMK
Ga0272435_1000109153	F079402	N/A	MRNKLKMNKNHFSIKEMKIAYVKSRVSETTIKYIALRMKNMITNSFLEAEEILSIINKMYNDLNQHHTTQRQFLKLYQNKIFFHEF
Ga0272435_1000109154	F025887	N/A	MSDDSFDFKSFTVDIILSNLEKIFRSFTLINTEVIDMTFIDESLMSELCERFDIQSISLSKSKLI
Ga0272435_1000109162	F013598	N/A	MNFIISLFDSSKYNAILTIICRLSKERHYISCITENEDITVEKTAEMLIQ
Ga0272435_1000109163	F017941	N/A	MKIADLKKNIEKSIYKQILEINEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272435_1000109166	F018839	N/A	MMIAKVVTFNHLTSDLYAAASIIVMFIELKDKAKLIELNDFMILNEDDFSLSRVTTEEINLFSI
Ga0272435_1000109167	F001253	GAG	VTFIKDVMKDVLISSTTSSLNDFFASKSLTIECVLSSNEINYSLKSLINTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYVKKLITYAIYSNLTVQDHMKRFVFMLITQLNQHQMILEKT
Ga0272435_1000109168	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCHHKYIALKQLNKSFSSFYSEFTRIFSFLNYNDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272435_1000109174	F061401	N/A	LNNDQQVIQEIKNKLKCIDNISKTIFYKAIIVTQSVNHLKSDHLKSRDVILTSVKEADILVESCFVCHKSNHSSKKCLDRSTKISAVNKEYDCFDFDLNFDSKN
Ga0272435_1000109175	F006206	GAG	LCKLNEILSKENYFEKSFLIDAHLIFQKRSFSLRLLIDSDSVVYMIIHFNLVNKVCKKLKIQLISLTKEKLIRDYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIADINHHEVILSKF
Ga0272435_1000109177	F104131	N/A	MSRLFKEHFKASFFIVEDNDSFAEIITSSMTIKALKKQCEELKAKLQAKEIILSSSIYSECSRFQKILDSSLFTDEKNSISKN
Ga0272435_1000109180	F044226	N/A	MKFSDNFNTFLTISMISFYFNKDFHSRMSFDSDTTDYEMTHQCIETRKINDIVI
Ga0272435_1000109182	F059497	GAG	MSIKDIDRKIVYNTQCKLNVLDVTFIDASAQNLKDIKVKLSLKYQNFLNVFDRAQVNKLSFHHSYDHKIKFTNDVTSSKCQAY