Scaffold Ga0272435_1000104

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000104
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 149820
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (54.80%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F019584	Metagenome	228	Y
F021452	Metagenome	218	Y
F061402	Metagenome	131	Y
F069514	Metagenome	123	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100010413	F019584	GAG	MIKAQTTKQIIFAEESVKATRKIIEIKMTDQSKSHDAVLTSIKENDLLIENCFLCHKSDHTSKECLNKSFRINALNDKFDHSSNFDSESDSKN
Ga0272435_100010414	F104131	N/A	MSRLFKEHFEASFFIVKDNNSFAEIITSSMIIKALKKRCEELKAKLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSI
Ga0272435_100010418	F069514	GAG	MIKFVNNNALFSVIFLISFFLNKDFHSCMSFELDTIKYESSHERLQATKVENISEHMNKILTFARESLVKTRKQMIQQANKHRKEVDYKIESKMFLNK
Ga0272435_100010421	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIELKDEAKLMKLDNFTILLKKDDFSLS
Ga0272435_100010427	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIESKDKAKLIELDDFTILLNENDFSLSQVMTEKIDLFNI
Ga0272435_100010429	F001253	GAG	VTFIKDVMKDVLISSTTSSSNDLFALKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHNAKKLITHAIYLNLTVQDHMKRFISMLITRLSQHQMILEKT
Ga0272435_10001044	F061402	N/A	MTEFVDNNAISSSIEQSAFFLNKSFHSHMSFDSNSTEYEITRARIQASKAENIFEHMK
Ga0272435_10001049	F021452	N/A	MLDDSFDFKSFIVNIILSSLEKMFRFFALIDIEVTDMMFIDDSLISELCECFDIQSISLFKSKSIHSYDKILDRRSITHALYISVTIQEHKNEMMFLLITRLDQHKIIIDNF