Scaffold Ga0272435_1000101

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000101
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 150307
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 103 (53.93%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F017767	Metagenome	238	Y
F018839	Metagenome	232	Y
F019584	Metagenome	228	Y
F021452	Metagenome	218	Y
F028978	Metagenome	189	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y
F058565	Metagenome	134	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000101183	F058565	N/A	MMMNCMNCSNVDLKTIASDVNSLQENKDARLKHSCNNEKNVVNIIDLLIKISTVMILVLSDSIF
Ga0272435_1000101184	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQLLSELLKHLKEIYEDQNLIQKCRCKYIVLKQLNKLFSFFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNVLSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272435_1000101185	F001253	GAG	VTFIKDVMKDVLISSTTSSSNDFFALKSLTTECVLSSNEINYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKFKSIREFNDHYAKKLITHAIYSNLTVQDHMKRFIFMLITRLDQHQMILEKT
Ga0272435_1000101186	F018839	N/A	MMIAKVVTFNHLTSDLYAAVSIIAMFIESKDEAKLTELDDFTILLNEDDFSLSRVTTEEIDFFNI
Ga0272435_1000101188	F028978	N/A	MKIADLEEKENDESIYQLILETNRINENYILLREVVLKNEAQYENTKLRDCRVQNEILYRDDLL
Ga0272435_1000101190	F069514	GAG	MIEFVDNNALFSVIFSISFFLNKDFHSHMSFEFNVNEYESSCERLQTTKVENISEHMNKTLKFACESLVKT
Ga0272435_100010135	F032102	N/A	MKIADLEKNISELIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRVQNEILYKDSQL
Ga0272435_100010140	F017767	N/A	MSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVMTQIVCD
Ga0272435_100010141	F003820	N/A	MKLFSYLDYNDCTLMNNLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTIVSDKHAATSLSVTTSIIDYVKFIFSSISESARSSIICYTCKISSHLFKNYSQNKINTSAFHVFTLHLHEIIISKNKENEKMSSENSEAKN
Ga0272435_100010151	F003820	N/A	MKLFNYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIHLRIFLQDVNNKQRVNYQLRSQLRTIIIKVTVVSDKCAATSLSAVTTLIIEYVKLTIFSISESVKSSIVCYICKISDHLFKNCSQNKINILTFHAFILRLHEIIISKNKENEKMSSFSKNSEAKN
Ga0272435_100010152	F000597	N/A	MKDVLISSTMSMSDDFFAFESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHMIDTTSILITRLNQHQMILEKT
Ga0272435_100010161	F021452	N/A	MSDDSFDFKLFTVDIILNSLEKKFRFLTLINTEVTDMIFIDESLMSKLCECFDIQSISLSKSKLIQLYDEISDRKSITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENL
Ga0272435_100010170	F019584	GAG	MIKAQTTKQIIFAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFDSESDSKN