Scaffold Ga0272435_1000094

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000094
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158794
• Total Scaffold Genes: 196
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 114 (58.16%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F017941	Metagenome	237	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100009418	F017941	N/A	MKIADLKKKISESIYKQILETNEIDENCTLLREAILKDEA
Ga0272435_1000094182	F017941	N/A	MKIADLKKNVSESIYKQVLDANKIDENCTLLREAKIRDEAQCKDIKLKNC
Ga0272435_100009419	F069514	GAG	MIEFIDNNALFSIIFSISFFLNKDFHSCMSFEFNVIKYESSHERLQMTKVENIFEHMNKTLKFARKSLVKT
Ga0272435_1000094194	F001253	N/A	VTFIKDAMKDVLIFSTMSSSNDFFASKSLTTECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFNDHYAKKLITHAIYSNLTVQDHMKRFISMLII
Ga0272435_1000094195	F037508	N/A	VIFRLEDDADQQIYAKHHVEAFSFYQSLSELLKHLKEIYEDQNLIQKCHHEYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272435_100009420	F094626	N/A	MMKQVNKHRKEVDYEIKSKMFFNERNIITARFFKKLNDKMFNSFINLDFIDSSYKLKLSEFMHVHDVFYSDLLCFVIDDFLSDQKNESSDSIVINDENE
Ga0272435_10000946	F000597	N/A	MSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNSTVQDHMIDTASMLIIRLDQHQMILEKT