Scaffold Ga0272435_1000080

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000080
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171886
• Total Scaffold Genes: 160
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (45.62%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F017941	Metagenome	237	Y
F025887	Metagenome	199	Y
F032884	Metagenome	178	Y
F036036	Metagenome	170	Y
F055318	Metagenome	138	Y
F089603	Metagenome	108	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100008035	F001253	GAGG	VTFIKDVIKDVLISSTMSSLNDFFASKSLTIECVLFSNEISYSLKSLIDIEAADYSFIDELIMQNVCDHLQIESLSLIKLKSIRRFNDHYAKKLITHAIYLNLTVQDHMKRFVSMLIT
Ga0272435_100008048	F017941	N/A	MKIADLKKNISESIYKQILKINEINKNCTLLREAIARDETQYEDIKLKNC
Ga0272435_100008049	F094626	N/A	MFLNKQNIITARFFKKLNDKILNSFKITDSVDFFYKLKLLNTMHIHDVFHLELLHFIIKDFLSDQKNESSKSIVINDEDK
Ga0272435_100008056	F025887	N/A	MSDDSFDFKSFTVDIILNSLEKIFRFFALINTEVTDITFIDESLMSKLCEHFDIQLISLLKSKLI
Ga0272435_100008066	F032884	GAG	MTIRNERVERQECKETKKNESTMMRIEKERLYAQTIDVIDQRKDIKQRLWSEYM
Ga0272435_100008067	F089603	N/A	MINSHYREVERIIKKTKNIVMYIDASQIQKKIAEIETETETTVIFTHKLIRYSKVTSVYDKIITTKAKLQAISDAIAICSEKALKNSEI
Ga0272435_100008079	F089603	N/A	LHYREVERIIKKAKNIVMYIDASQIRKKIAEIETETETAVIFTHELIRYSKATSVYDKIITTKAKLQAISDAIAICSEKALKNSEI
Ga0272435_100008080	F032884	GAG	MTIRNERVEHQECEEIKKNESTMTRIEKERLYVQTIDVIDQ
Ga0272435_100008085	F036036	N/A	MLISLIHHLFSCFDQSFASKDQCLIHVIEYIFDLSNLQTFTNAFILDDVRIEAYIRMKALVHEEESQEDN
Ga0272435_100008090	F003820	N/A	MKLFNYLDYDDCILMNDLQNKINNCLQNILSVCSKNFTSLTCLRIFLQDVNNKQRVNYQLRSQLCTVIIKVIIVSDKCVATLLSVMTLIIDYVKSILSSIFESVRSFIICYIYKISNHLFKNCSQNKIDISTS
Ga0272435_100008093	F055318	N/A	LNDIKALRDDEALCVDRVQSFRDHADFNNLNAHATSNLHADEKVK