NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272435_1000073

Scaffold Ga0272435_1000073


Overview

Basic Information
Taxon OID3300031447 Open in IMG/M
Scaffold IDGa0272435_1000073 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)177977
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)123 (58.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.7Long. (o)159.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001253Metagenome736Y
F013598Metagenome269Y
F017941Metagenome237Y
F018839Metagenome232Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272435_1000073193F001253GAGGVTFIKDVMKDVLISSTMSSSNDLFASKSLTTECILSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIELLSLIKLKSIRKFDDHYAKKFITHAIYSNLTIQDHMKRFVFMLIIQLSQHQMILEKT
Ga0272435_1000073195F018839N/AMIAKVVTFDRLTSDLYAAVSIIAMFIELKDEAKLTELDDFMILLNEDDFSLSRVTTEEVDLFSI
Ga0272435_1000073200F017941N/AMKIADLEKNIEKSIYKQILEINEIDENCTLLREVVLKDEAQYEDTKLRDCRVQNEILY
Ga0272435_10000735F013598N/AMNFIIDLSDSSEYNAILTIICRLSKERHYISCITDDEGITAEKTAEMLIQ
Ga0272435_10000736F048685N/AMYRSGKQNIKVDALTRRADVVLRDSEDERVRYQRITILTSNRMKIADLKKNISESIYKQILEANEIDENCTLLREAIARGEAQYEDIKLKNCRIQNEILYKGSQL
Ga0272435_10000739F000597N/AMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIGTASMLITRLDQHQMILGKT
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