Scaffold Ga0272435_1000069

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000069
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 181555
• Total Scaffold Genes: 202
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 109 (53.96%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000069162	F003820	N/A	MKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKCAATSLSMMTLIIDYVKSILSSISESARSSIICYTCKISSHLFKNCSQNKINTSVFHAFTSRLHEIVISKNKKNEKMSSFKDSEAKN
Ga0272435_1000069163	F000597	N/A	MSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFDDHYVKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272435_1000069167	F032102	N/A	MKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCQVQNEILYKDSQL
Ga0272435_1000069168	F013598	N/A	MNFIIDLFDSSEYNAILMIICRLSKKRHYISCITDDEDITVKKIAEMLIQ
Ga0272435_1000069171	F036036	N/A	MLISLIHHLFSCFDQSFMSENQSLVHLFRYILDLINLQAFANAFILDDVEIEAHMRMKALVHEEENQEDD
Ga0272435_1000069172	F013598	N/A	MNFIINLSDSYDYNAILTVICRLSKERHYISYIIDDENITAEKTAEMLIQ
Ga0272435_1000069173	F017941	N/A	MKIADLKKNNDQSIYKQILEINEINENCTLLREAIARDETQYEDIKLKNC
Ga0272435_1000069176	F000597	N/A	MSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKSIREFDNHYAKKLITHVIYSNLTVQDYMIDTAFMLITRLNQH
Ga0272435_1000069178	F001253	N/A	MKDVLISSTMSSLNDFFASKSLTIECILFSNKISYSLKSLIDIEAADYLFIDELIAQNVCDHLQIKSLSLIKLKSIRKFNDHYAKKLITHVIYLNLTVQDHMKHFVFMLIT
Ga0272435_1000069184	F017941	N/A	MKIADLKKNINESIYKQILETNEIDENCTLLREVVLKDEAQYEDTKLRNC
Ga0272435_1000069186	F069514	GAG	MIEFINNNALFSVIFLISFFLNKDFHSHMSFELDVIKYESSHERLQMTKAENISEHMNKTLKFAHKLLVKT
Ga0272435_1000069187	F094626	GAG	MMKQVNKHRKEVDYEIKLNMFLNERNIITARSFKKLDDKMLNSFINLDFINSSYKLKLSESMHVYDVFHSDLLCSVVDDFLSDQKNELSDSIVINDENE
Ga0272435_1000069196	F104131	N/A	MSHFFKKRFEASFFIVEDNDSFAEIIISSMTMKALKKRCKKLKARLQAREIISSSSIYFERSRFQKILDSSLFIDEKNSI
Ga0272435_1000069198	F017941	N/A	MKIADLEKNVSESIYKQVFDANEIDENCTLLREAIERDEAQCKDIKLKNC