Scaffold Ga0272435_1000060

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000060
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 195529
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (33.70%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008735	Metagenome	328	Y
F009377	Metagenome	318	Y
F009580	Metagenome	315	Y
F017767	Metagenome	238	Y
F020121	Metagenome	225	Y
F028667	Metagenome	190	Y
F032102	Metagenome	180	Y
F055317	Metagenome	138	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000060103	F028667	GAG	MLIELRDQRDMTLKLNEQXINVQVNHIKRLDELEINQMTIDTQEETIVKLREKVLSLKKKQRSANQSRSRQSTESRASTKSLPRQSIENHTRRESFTLFNNDHHKFFKFLNSSIFTDEDELIXDSXRIKMNDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFARCRHDASHSYISIDELFKHLKEIYDELNRNRKCRRKYNALRQTDKSFNVFYFNFMKLFSYLDYDDCILMNNLQNKINNRLQNALSVCSKNFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIIKVTVVSDKRAATSLSAVTTLIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINISTSCAFTSRLHEIVISKNKENEKMSSFEDNEAKN
Ga0272435_1000060107	F009377	N/A	MTRSTELESESMSTTHYETQDAERESLLSQNXTASEEKDTNASLNIEEENTNALFFDHEMIKISISTELNAXINAHEADDLVAFIKYICQQHDIEIKIYNDMIQILNDINKINIELKAINIKLKATQTILNAVXMHLQKEIKKKNMIIHHLEATSSRLSTLISKDXFLKLIKLSDLSLFENSKQNVNNXLSXMXNKLKMNKNHFSIKEMKIAYVKSRVSEMMIKHIAFRMRNMIMNSFLEAEEILSIINKMYDDFNQHHMTQQQFLKLYQNKIFFHEFXMKFQRLSAKLEYNNKTLLDDLQHKISSDL
Ga0272435_100006025	F017767	GAGG	VTFIKDAMKEMLISSMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFID
Ga0272435_100006026	F064252	GAG	LSLKKKQRSANQSXSXQSTKSXASIENYTRRESSTLFNNDYHKFFKFSNSFIFTDEDESTXNSXRIKIDDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXHRHDALHSYILINELFEHLKEIYDELNRNXKCRCKYNTLRQAEKSFNVFYFNFMKLFNYLEYDDCILMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQXVNYQLRSQLRTVIIKVTVISDKCIATSLSMTTSIIDYVKSILSSTSESARSFIICYTCKISSHLFKNCSQNKINTFASCAFIFCLHEIIISKNKKNEKMSSFKDSEAKN
Ga0272435_100006057	F055317	N/A	MFNDEKNSTXKNXSLDIQKKLAINVDIFSNKLYKLSYINSXLADDVVEITQVKHNLNCDNLYLTINELLEKLAQSFHDSDKKDNYRRKYINLIQESKKFNDFFNQFQXLYIYLKYQKNVLVVNLKNKINSRLXIFXTAQMKSLIKLSNIRNYLIRLNNEHRAVREIKNKLLKHDDSKIIISRATIAVQSSTLKSDXSKSRSAVLTNVKNADVLVEICFVCHKSDHSFRECLNRSIKVNAVDENYDHFELDTESEFESKN
Ga0272435_100006059	F028667	GAG	MTLKLNEQXIDIQVDHIKRLDELKNNQITIDTQEETIINLQEKVLSLKKKQRSANQSRSRQSTKSLPHQSIENHTRRESFTLFDNDHHKFFKFSNSFIFTDEDESTXDSXRIKIDDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXRQHDASHSYISIDELFKHLKEIYDELNRNRKCRRKYNALKQTDKSFNVFYFNFMKLFSYLGYDDCILMNDLQNKINNRLQNALSVCSENFTLLTRLKIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVSEKCAATSLSAMMTSIIKYVKSTIFSTSESVRLSIVCYICKISDHLFKNCSQNKINISTSCAFTSRLHEIVISKNKENEKMSSFSKNNETKN
Ga0272435_100006062	F032102	N/A	MKIADLKKNNDQSIYKQILEINEIDENCTLLREAIARDETQYEDIKLKNCXTQNKILYHDSQC
Ga0272435_100006073	F020121	GAG	MKKLIKHLHDEMLIAQIIYESHLNLFHRSCSKYFVEDEVXLNACNLSIAHFTVKLNNHNVDLFKIKHVFKNNSLIIELNLLIFMKIHSVFHVILLSHIANDLLSSQRQKFQEFVIIENDERFXYVNSILNFKHDKCYHSSLLKYYVDXENHFFTXKSFNLLNNCEQTLNKYHLVNSIVEELHVLSCVMFQC
Ga0272435_100006078	F009580	AGTAG	MICIQISERNLAQRLNFSCEQRNFFIYIDDITVVDVYDMQSEELLIXAFFSDFAXMLQLAIVAQLSLVANFLDFRNDQNLILNDDNDEA
Ga0272435_100006080	F008735	N/A	MKEIMIIVHVHALYQTLLSCIQSIFVLLILRYVKKLLKSRSNDDSDRICKEMNDERRLIVQDLCNDLSYHCKKLRIQLYINXRTENDEQEXSDDIMLLNLILKLLHCAKSLDXIFNHTLSKLFNSTLIVDQEIIRXLYLSERIIKQDFNVXKCCRKCKSFIMSKTRLN