Scaffold Ga0272435_1000049

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000049
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 213204
• Total Scaffold Genes: 257
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 152 (59.14%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F036036	Metagenome	170	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100004910	F013598	N/A	MNFIIDLSDSSEYNAILTIICRLSKKRHYISCIIDDEDITVKKTAEMLIQ
Ga0272435_100004911	F017941	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREAIARDETQYKDIKLKNC
Ga0272435_100004914	F000597	N/A	MSDDSFASESLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLIT
Ga0272435_100004915	F003820	N/A	MKLFNYLDYDDHILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVMIISDKHAATSLSITTSIINYVKSIFSSISESARLSIICYTCKISSHLFKNCSQNKVNTFASCVFILRLHEIIISKNKENEKMSSENSETKN
Ga0272435_100004921	F001253	GAG	VTFIKNAIKNVLISSTMSSLNDFFALKSLTIECILSNNEINYSLKSLIDIEAADYSFIDELIMQNVCDHLQIESLSLIKLKLIRKFDDHYAKKLIIHAIYSNLTVQNHMKCFIFMLITQLDQHQMILEKT
Ga0272435_100004922	F018839	N/A	MMITKVVIFNHLTSDLYAAVFIIAMFIKSKDENLIELNNFTILLNEDDFSLS
Ga0272435_1000049246	F001253	GAGG	VTFIKDVMKDVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIKSLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFIFMLITRLSQHQMILEKT
Ga0272435_1000049249	F017941	N/A	MKIADLEKNISESIYKQILEINEIDENCTLLREAIAKDETQYKDIKLKNC
Ga0272435_1000049250	F013598	N/A	MNFIIDLFDSSEYNTILMIICRLSKKRHYISCITDDEDITVKKTAEMLIQ
Ga0272435_1000049256	F084912	N/A	MTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFDSESDSKN
Ga0272435_100004930	F006206	N/A	VKIISLCNLNEILSKENYFDKSFLVDALLILQNELFNLRSLIDSDSIVYMIIHINLVNKVCKELRIQSISSTKEKLIKEYNEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKS
Ga0272435_10000499	F036036	N/A	MLVNLIHHLFSCFDQSFTSEDQCLVHLFRYILDSINLQTFASAFILDDVRIKAHMRMKVLVHEEEDQEDD