Scaffold Ga0272435_1000047

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000047
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 215994
• Total Scaffold Genes: 242
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (26.45%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F032884	Metagenome	178	Y
F037509	Metagenome	167	Y
F044227	Metagenome	154	Y
F065268	Metagenome	127	Y
F070712	Metagenome	122	Y
F079402	Metagenome	115	Y
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000047135	F002432	N/A	MQNDXAKXLLMIEFSENFNIFLIISMTSFYFNKSFHLRMSFDSDTTNYETIRERLEARKADDIVIQMKELLIFDHQQLKKMKQIIKAQINKHKRDVIYEVDNXVXLFSRNIKTTKSCKNLKDKQLESYQITVKVEIFYHFYLSISMKQLHSMFSSKLLCSCLNNLLSEQHSESSKSLTIEDDEHXEIDDILNSRRYRDRIQYKVKXTKLDXNNEXYYVDKEEFKSLKEVLVEFHKLYSDKSY
Ga0272435_1000047139	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTLIDYSKLHDVILTNIKDIDLQAEICFICHKSDHTSKECSDQSRVNALKDDEFNXFTLNSKFDSDSKN
Ga0272435_1000047142	F037509	N/A	MILIYILIQIHSTDNEMSIKKFVYLMINDIERQNNIKKSIESTKTYDRVIARESIAQSVASVQID
Ga0272435_1000047157	F079402	N/A	MQNKLKMNKNHFSIEEMKIAYVKSXVSETMIKHIAFRMKNMIMNSFFKAEKILLIINKMYDDFNXYHTTQXQFLKLYQTKQDFLSXILNEISET
Ga0272435_1000047159	F065268	N/A	MIKSTELKSESMSMIHYELXNAERKSLLSQNXTASEEEDMNASSNIKEKNMNALLFNYKMIKISISIKLNAXISTHEVNDFVAFIKYICQQHDIKIKIHNDMI
Ga0272435_100004725	F044227	N/A	MQLQLRSSDDKICTHALLKLIAFAIKNAIRCQLLELSNNHHYHKKSQSSSKNDDENEVSKTI
Ga0272435_100004755	F083460	N/A	MQLRIKSLNSQAYSDALLELNASLIKYAMRRXLHELSSHRLNHEESQDNSKNDDENEAAEAV
Ga0272435_100004756	F044227	N/A	MMQLXMKLLDDKACIHALLKLIAFAIKNVTKCXFFKLFNNCYHHKEFQSSSENDDENEALEAI
Ga0272435_100004768	F083460	N/A	MQLRMKSSDSQAYSDALLELNASSTEYATKRXLHELLNHHLNHEESQSNSENDDENEAAEAV
Ga0272435_100004790	F032884	N/A	MTIRNERVEREECEETKKNESTMMRVEREHLYVQTIDVIDQREDIKQRLWSGYM