Scaffold Ga0272435_1000046

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000046
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 216804
• Total Scaffold Genes: 200
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (30.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F025887	Metagenome	199	Y
F052973	Metagenome	141	Y
F057010	Metagenome	136	N
F074203	Metagenome	119	Y
F079402	Metagenome	115	Y
F098340	Metagenome	103	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000046196	F102179	N/A	MYIRSMLLKIMTLTMQETHLNEVHFLKNKIFQFESTTLRRINVETLTHRNYNVTEKQLNSVVKTVDCKQLILHAIVKVLTIHEIIYNFNSKFIIKLIKILQQEDEFTVKLKANEMMSI
Ga0272435_100004646	F057010	N/A	MSRFFKEHFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKAKLQAREIISSSSIYSERSRFQKILDSSLFIDEKNSIXKNXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNLYKIIDKLLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIINLKNKINLRLQFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAXTTKQIIFAEESVKATHRIIEMKMTDQSKSRDAVLTSVKENDLLIKNCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN
Ga0272435_100004647	F007840	N/A	MIDAIERQNNTRESIESTARLIELLDDLQLIKYASFTSINRISDKESSLIARKSNRSRESINSQIKQQKQLYLLLLSITLRSISFF
Ga0272435_100004651	F079402	N/A	MQNKLKMNKNHFSIKEMKIAYVKSQVSETMIKYIALRMKNMITNSFLEAEKILSIINKMYDDFNQYHMIQQQFLKLY
Ga0272435_100004652	F025887	N/A	MSDDLFNFKSFTVDVILNSLEKIFKFLALIYTEVIDMTFIDKSLMLKLCEHFNI
Ga0272435_100004653	F098340	N/A	MIEVIVYQTLVKNKKIKIFFLIISEINKVLSSVKIFAKLNEMIFVMSLNELKKKLSIVYHDFLNVFDREKIMQLSLHXSYNHKIKLEEENQLSKS
Ga0272435_100004655	F052973	GAG	MFRDCARLERDVFVTRKEDDVDEQDVDERKECWGRKRVLSHI
Ga0272435_100004662	F074203	N/A	MFSHSFTEEHSEEFRNHFFYISDAESRTKLSSAASFIHEDDESFAEMIILFVFYEIXKTXSLALDKETDQLYELDKQQEDEIKELKTKLQAKENTSSDFIYFERSRSQKISDSSLFTDEKNSTXENXYGKIQNKLEINIDLFSNEXVKLSYVHSKLFNDAAKIIQTRREHDCVNLYKIIKDFLKKLTQLFDDSNKKVNFHRKYYNLIQESKKFSEFYTQFQQLFFYLDYHEKQLIVDLKDKIHSHLXFVXVD