Scaffold Ga0272435_1000020

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000020
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 264684
• Total Scaffold Genes: 286
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 154 (53.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F037508	Metagenome	167	Y
F084912	Metagenome	111	N
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_1000020266	F013598	N/A	MNFIIDLSDSSEYNTILMIICRLLKERHYISCITDDEDITVKKTAEMLIQ
Ga0272435_1000020267	F017941	N/A	MKIADLKKNISESIYKQILEINEIDKNCTLLREAIARDEAQYEDIKLKNC
Ga0272435_1000020272	F001253	GAGG	VTFIKDMMKDVLISSTTSSSNDFFASKSLTTECVLSSNKISYSLKSLIDIEAADYSFIDELITQNVCDYLQIKSLSLIKLKSIREFDDHYAKKLIIHAIYSNLTVQDHMKRFVFMLITRLSQHQIILEKT
Ga0272435_1000020273	F037508	N/A	VNHYSTEKICIVYVIFRLENNANQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIQKCRCKYVALKQLNKLFSFFYSEFTRIFSFLNYDDIILMNDIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272435_1000020280	F104131	N/A	MFRLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIILSSSIYSEHSKSQKILDSSLFTDEKNSI
Ga0272435_1000020282	F104131	N/A	MSRLFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSI
Ga0272435_1000020284	F084912	N/A	MKMTDQSKSRDAVLTNVKENDLLIENCFLCHKFDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN