Scaffold Ga0272435_1000010

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000010
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 320291
• Total Scaffold Genes: 372
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 222 (59.68%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F021452	Metagenome	218	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100001010	F037508	N/A	VNHYSTEKICIVYVIFRLEDDADQQIYAKHHVDVFSLYQSLSELLKHLKEIYKDQNLIQKCRCKYVALKQLNKFFSFFYSEFTKIFSFLNYDDIILMNDIQNKINNHLQNMLSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLCDKQ
Ga0272435_100001011	F098340	N/A	MIKVVVYQTLVKNKKIKIFFLIISEINKALNSVEDFAKLNEMISVMSLNELKKKLLIIYHDFLNVFNKEKITQLFLHQSYCQNSSLVRSILASSS
Ga0272435_100001012	F003820	N/A	MKLFSYLKYDDCILMNDLQNKINNRLQNTLSICLEDFASLHHLKIFLQNVNNKQRVNYQLRSQLCTVIIKVIIISDKCAVTSLSAVMTLIIEYIKSIIFSISESVRSSIVCYICKISDHLFKNCSQNKIDILTSHAFTLHLHEIIISKNKEKKKISSSSKNSKIKN
Ga0272435_100001013	F000597	N/A	MKDVLISSTMSMSDDSFAFESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIVQIVCDQLQIESLTLIKAKSIQEFDDYYVKKLITHVIYLNLTVQDHTINTASMLIT
Ga0272435_100001017	F032102	N/A	MKIADLKKNNDQSIYKQILEINEINKNCMLLCKAIARDETQYEDIKLKNCQTQNEILYHDSQL
Ga0272435_100001018	F013598	N/A	MNFIIDLFDLYDYNAILTVICRLSKERHYIFCITDDEDITAEKTAEMLIQ
Ga0272435_100001019	F036036	N/A	MLISLIHHLFSCFDQSFTSEDQSLVHLFRYILDLINLQAFASAFILNDVRVEAHMRMKALVHEEENQEDD
Ga0272435_10000102	F094626	N/A	MFLNERNIIIARFFKKLNDKMLNSFINLNFIDSSYKLKLLKSMHVHDVFHSDLLCSVVDDFLSDQKNELSNSIVINDEDE
Ga0272435_100001022	F021452	N/A	MSDDSFDFKSFIVNIILSSLEKIFRSFTLIDIEVIDMTFINESLMSKLCECFDIQSILLSKSKSIQSYDEISDQKLIIHTLYILIMIQEYKNEMILLLITCLDQYKIIIENL
Ga0272435_10000103	F069514	GAG	MIEFVDDNALFSIIFSISFFLNKDFHSCMSFELDDIEYESSYECLQMTKVKNIFEHMNKTLKFICKSLVKT
Ga0272435_10000107	F018839	N/A	MMIMKVVTFDHLTSDLYAAVSIIAIFIESKDEVKLIELNDFTILLNEDDFSLSRVMTEKINLFNI
Ga0272435_10000109	F001253	GAG	VTFIKDAMKNVLISSTMSDLNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFINELIAQNVCDYLQIESLSLIKLKSIREFNDHYAKKLITHAIYLNLTIQDHMKRFVFMLITRLDQHQMILEKT