Scaffold Ga0272435_1000003

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1000003
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 572686
• Total Scaffold Genes: 698
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 418 (59.89%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F025887	Metagenome	199	Y
F028978	Metagenome	189	Y
F037508	Metagenome	167	Y
F059497	Metagenome	133	Y
F069514	Metagenome	123	Y
F070712	Metagenome	122	Y
F084912	Metagenome	111	N
F094626	Metagenome	105	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100000342	F025887	N/A	MSDDSFDFKSFTVDVILNSLEKIFRSFALIDTKVTDMTFIDESLMSELCECFDIQSISLSKSKSIRSYDETSD
Ga0272435_100000355	F084912	N/A	MTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSSNFNSESDSKN
Ga0272435_100000357	F059497	GAG	MSIKDIDREIVYNTQCKLNVLDVAFIDASAQNLEDIKVKLSSKYQNFLDVFDRAQVDMLSSHRSYDHKIELTNDVTSSRCRAY
Ga0272435_100000367	F098340	N/A	MIKVVAYQTLVKNKKIKIFFLIISEINKALSLVEDFAKLNEMISVMSLNELKKKLSIVYHDFLNVFDKEKITQLSLH
Ga0272435_100000369	F094626	GAG	MMKQVNKHRKEVNYKIESKMFLNERNIVTARSFKKLNDKMLDSFINLNLVDSLYKLKLSESMHVHDVFYSDLLHSVVNDFLSDQKNEFSDSIVINDENE
Ga0272435_100000370	F069514	GAG	MIKFVDNNALFSVIFSISFFLNKDFHSRMSFEFDVIEYESFHERLQMTKVKNISEHMNKTLKFACESLVKT
Ga0272435_100000371	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKRDSLNFYRKIEVTTLVDHSKLCDVILTNVKDIDLQAEICFICHKSDHTSRECSDRSRINALKNNEFDQFTLNFEFDSDSKN
Ga0272435_100000372	F006206	GAG	LCSQIEVLLKENYFKKLFLINASLISQSNSFSLRSLIDSDFIIYTLIHDKLVDKVCQKLEIQFILLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHKAILSKL
Ga0272435_100000390	F069514	GAG	MIEFVDNNALFSVIFSISFFLNKDFHSRMSFELDVSEYESFHERLQMTKVENISEHMNKTLKFARESLVKT
Ga0272435_100000391	F028978	N/A	MKIADLEEKENDESIYRLILEVNRINENCILLREVVLKDEAQYKDTKLKDCRVQNEILYQSDFL
Ga0272435_100000396	F001253	GAG	VTFIKDVMKDVLISSTTSSSNDLFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFINELIAQNVCDHLQIESLSLIKLKSIREFDDHYVKKLITHAIYSNLTVQDHMKHFTSMLIT
Ga0272435_100000397	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIQKCCCKYIALKQLNKSFSSFYSEFTKIFSFLNYDDITLMNDIQNKINNHLQNALLICLIKFSLLDKLKIFLQDVNNKQ