Scaffold Ga0170820_15075683

Overview

Basic Information

• Taxon OID: 3300031446
• Scaffold ID: Ga0170820_15075683
• Source Dataset Name: Fir Summer Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010375	Metagenome / Metatranscriptome	304	Y
F021030	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170820_150756833	F010375	GAGG	MLMRYLGSAAMVLGLVCCVSAGCGVTRDVGLAARCADMMQLAFPSANIEIGKSEASATSLTTIVARVEGTRSNIPPEGPLMRNLAVECQFDNNILTAFRWTAGPLR
Ga0170820_150756834	F021030	AGGAG	LALWRAASKKGFRAWCYKFGLAGSFTHTVAIVEAGDVLQIHDAFFNLTYPLGFHELLSELRDGRPVAAKTETRDRKIYVMDPAFEPEAAVGWLETNADRELTSADGLRRFELLWNLEAFIATCPGLGAVYQD