NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170820_11833693

Scaffold Ga0170820_11833693


Overview

Basic Information
Taxon OID3300031446 Open in IMG/M
Scaffold IDGa0170820_11833693 Open in IMG/M
Source Dataset NameFir Summer Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010283Metagenome / Metatranscriptome306Y
F020945Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0170820_118336931F020945GAGMKMNPLLLVVILLLVLSGSFVNAGPVGDFFKKVGHSISKPLQSQPPPPPQ
Ga0170820_118336932F010283N/ALMFHPAARGFGLCSLLVKIMMVYAIKESGRDSPDEEYLAHVVDGNGAPLHSLLEAGFRPIGPVDVHRGDIDAVIDHMIKGGESVVHMQGFVFDREAIRKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSDVIPPTDLNI
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