NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307945_1163704

Scaffold Ga0307945_1163704


Overview

Basic Information
Taxon OID3300031404 Open in IMG/M
Scaffold IDGa0307945_1163704 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #228
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)593
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009455Metagenome317Y
F040417Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0307945_11637041F040417N/ANIEKIDEVDAEERFKREQQFINELSTLNQHTFYSQFRDNYHRQYFLAHRDKTTCECGGIYTYDHKARHFKSEKHINFVS
Ga0307945_11637042F009455N/AMEQLQLSISPAQMKKIQKGLPIQISHGSIGSGDVVISLRPEKAKKMVSAYKRGKGLRIQMDEDEVRASGLLGDLKKLGKKVEKGVVD

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