Scaffold Ga0307945_1065474

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307945_1065474

Scaffold Ga0307945_1065474

Overview

Basic Information
Taxon OID	3300031404 Open in IMG/M
Scaffold ID	Ga0307945_1065474 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #228
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1404
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F079392	Metagenome	116	N
F104017	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307945_10654743	F104017	GGA	MKKPTLTQIRQAVESAGGTYRKLKIYLHGNDAYEINGVTMTKVEMMERYKMGEL
Ga0307945_10654744	F079392	N/A	MEVAGMTQATPVWEYIAIKHERNVTHAASALGVDPSTLHRVMNSGYVINGRLYTTKREAK

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